Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10693
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi...    31   0.64 
At2g13610.1 68415.m01500 ABC transporter family protein                28   6.0  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    28   7.9  

>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 867

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 58  DTFWYLLHGKFTVLRRS*RTSKTLVTIILRNPILHQNFASNYLKPNRYAWLPKLVKQSFN 237
           D FW L+H   + +    R S  LV  +  NP L  N   N L  +   +  +L  ++FN
Sbjct: 114 DVFWVLIHILLSSIHTHDRASNLLVMFVSNNPTLIPNVMVNNLVDSSKRFGFELTPRAFN 173


>At2g13610.1 68415.m01500 ABC transporter family protein
          Length = 649

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = -3

Query: 301 LSKSHIAGFDTSRLIWMLLFTY*KIVLQALAATRNDLVLGNSMRSFDVESDFL 143
           L+ S +A    S LIW++L+T   +V+   +A   + ++GNS+ S  + S FL
Sbjct: 494 LNPSFMAFLHFSLLIWLILYTANSVVV-CFSALVPNFIVGNSVISGVMGSFFL 545


>At3g17920.1 68416.m02282 leucine-rich repeat family protein contains
            leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -1

Query: 387  YLCKMSFRRVL*LPMEYKVNNSFF*FTSNCPKVTLPALILVDSSGCYCLRIK 232
            ++C   FR++  LP +   ++ +F   S+C    +  ++ V+S G  CL +K
Sbjct: 854  FICNEDFRQLSFLPTDDASSSPYFSLDSSCSISDIFEMV-VESRGSSCLSLK 904


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,626
Number of Sequences: 28952
Number of extensions: 290492
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)