Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10692
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    25   7.4  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   9.8  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    25   9.8  

>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 245 TYNLKFKANAHVTNVDRLQAHXXXXXXXXXXLNYRQIFRVLTLLRVQTY 99
           T N+ F A  ++ NV    AH           NY+Q  R+ +L  VQT+
Sbjct: 204 TSNVYFAAKYNL-NVSGTVAHEWYMGIAAITQNYKQANRIASLKWVQTF 251


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 317 IPSLAPTPAIDLNLKDYSFPVTKITYN 237
           +PS+ PTP   + L+  S P T    N
Sbjct: 6   LPSMQPTPTSSIPLRQMSQPTTSAPSN 32


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 237 FEIQSKRACNQRRSVTGPLVTVVIAKNLVKLQAN 136
           FE QSK   N +  + GP    +I +N  KL  N
Sbjct: 177 FESQSKSTDNFKELLNGPSKKDIITQNAEKLLRN 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,601
Number of Sequences: 5004
Number of extensions: 35842
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)