Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10692
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474...    28   5.7  
06_03_1402 - 29906706-29907047,29919049-29919485,29919622-299199...    27   10.0 

>02_05_1133 +
           34346894-34347121,34347222-34347283,34347373-34347460,
           34348005-34348268,34348346-34348586,34348672-34348748,
           34348837-34349007,34349084-34349176,34349257-34349406,
           34349491-34349577,34349656-34349820,34349900-34350019,
           34350244-34350446,34350547-34350696,34350779-34350926,
           34351046-34351129,34351207-34351308
          Length = 810

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 410 FYNFYKSKIRSNYFRREFNRYVFWFEILKREIPSLAP 300
           F N YK   R    ++  +    WF+ILK +I +  P
Sbjct: 367 FQNLYKKYEREGKAKKVVSAQALWFDILKAQIETGTP 403


>06_03_1402 -
           29906706-29907047,29919049-29919485,29919622-29919901,
           29921956-29922068,29922290-29922320
          Length = 400

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 317 IPSLAPTPAIDLNLKDYSFPVTKITYNLKFKANAHVTNVDR 195
           +PS  P   + L+L  Y + + ++ Y  K+K     T V R
Sbjct: 265 LPSALPVKELSLDLHMYDYDLGQMYYYKKYKCRVRKTKVAR 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,154,868
Number of Sequences: 37544
Number of extensions: 185439
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)