Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10692
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091)                   30   1.4  
SB_56770| Best HMM Match : Cadherin (HMM E-Value=0)                    28   4.4  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  

>SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091)
          Length = 581

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -2

Query: 146 YRQIFRVLTLLRVQTYFCVNFVFTNEICFFFN 51
           +R IF ++ LL V  Y  V FVFT  ICF  N
Sbjct: 226 FRVIFPLVILL-VSLYVLVGFVFTTWICFHSN 256


>SB_56770| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1136

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -2

Query: 386 IRSNYFRREFNRYVFWFEILKREIPSLAPTPAIDLNLKDYSFPVTKIT 243
           I+S +      ++ F  ++  +  P++  T  +DL++KD +    +IT
Sbjct: 829 IKSLFEHHSVTQFTFLVQVTNKAFPNIQATAKVDLSIKDVNNHAPEIT 876


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -2

Query: 386 IRSNYFRREFNRYVFWFEILKREIPSLAPTPAIDLNLKDYSFPVTKIT 243
           I+S +      ++ F  ++  +  P++  T  +DL++KD +    +IT
Sbjct: 60  IKSLFEHHSVTQFTFLVQVTNKAFPNIQATAKVDLSIKDVNNHAPEIT 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,852,550
Number of Sequences: 59808
Number of extensions: 247042
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)