Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10692
         (552 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    26   0.72 
EF519352-1|ABP68461.1|  448|Anopheles gambiae LRIM1 protein.           23   8.8  

>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 26.2 bits (55), Expect = 0.72
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -3

Query: 115 YVSKLIFVLILFSQMKFVFFLMKISDTRK 29
           ++ ++IF+++LF+ M F+ F+  I+ T K
Sbjct: 569 FLPQIIFLVLLFAYMVFMMFMKWIAYTAK 597


>EF519352-1|ABP68461.1|  448|Anopheles gambiae LRIM1 protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   QYNQLLNLRVSEIFIKKKTNFICENKI 89
           QYN + +++   +F K KT  +  NK+
Sbjct: 199 QYNFIYBVKGQVVFAKLKTLDLSSNKL 225


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,761
Number of Sequences: 2352
Number of extensions: 9091
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51301854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)