Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10691
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      28   7.7  
SB_2386| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 638

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 116 ESKLLSPKRNVADAVRLLNLAGGEATFVADTA 21
           E +  SP RNV+ +V L +  GG    VAD +
Sbjct: 601 EFRCQSPARNVSSSVELCSFVGGAVCCVADAS 632


>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 4   ENLYTLAVSATKVASPPARFNSLTASATFRLGDRSLDS-RTTKSSCPNYYHSAE 162
           +NL  ++   +K A P +  +    S  FR G    DS +T K  CPNY   A+
Sbjct: 463 DNLLAVSPPPSKEAEPKS-VHGEQLSDNFREGSLGDDSHKTVKEKCPNYITPAQ 515


>SB_2386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +3

Query: 237 NACLIPLF*FAAKKKADGLFS*LFFNLTLKFFYNALY*I--NKCQTKSVPA--QYESPN 401
           +AC + LF +A       +F  + +  T K+F  A++ +   K  T+S+P+  +Y+S N
Sbjct: 17  DACFMKLFQYALSNLDFSVFQLIDYPRTCKYFITAVFRVLETKAMTRSLPSSMRYDSLN 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,147,927
Number of Sequences: 59808
Number of extensions: 421552
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)