Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10690
         (296 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   3.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   4.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   4.9  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    19   8.5  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    19   8.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    19   8.5  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 100 LPWLFDTISVSFAVLVMI 47
           L W + TIS++F + V +
Sbjct: 3   LKWYYITISMAFIIFVSL 20


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 71  HRNGIKKPRKTRHESTLGMDPKFL 142
           HRNG+ +P       TL   P F+
Sbjct: 480 HRNGMYRPSIYFISKTLAESPIFI 503


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 71  HRNGIKKPRKTRHESTLGMDPKFL 142
           HRNG+ +P       TL   P F+
Sbjct: 480 HRNGMYRPSIYFISKTLAESPIFI 503


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 216 LPEKQRPRN 242
           +P+K RPRN
Sbjct: 247 VPDKNRPRN 255


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 140 LRNQRFCKKGNLKPAKQL 193
           L+N R CKK   K   Q+
Sbjct: 31  LKNFRLCKKHKTKKPVQI 48


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 140 LRNQRFCKKGNLKPAKQL 193
           L+N R CKK   K   Q+
Sbjct: 31  LKNFRLCKKHKTKKPVQI 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,819
Number of Sequences: 336
Number of extensions: 1167
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5322850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)