Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10690
         (296 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       84   2e-17
05_03_0661 - 16726958-16726966,16727133-16727234                       57   3e-09
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061     28   1.1  
06_03_0336 + 19671500-19672150,19672681-19673301                       27   2.0  
08_02_0588 + 19036509-19039235                                         27   3.5  
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560...    27   3.5  
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156...    26   6.0  
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210...    25   8.0  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = +2

Query: 23  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 178
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST GMDPKFLRNQR+ +K N K
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +2

Query: 23  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 130
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST G +
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36


>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
          Length = 691

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 86  KKPRKTRHESTLGMDPKFLRNQ-RFCKKG 169
           +KP K R    L +  +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482


>06_03_0336 + 19671500-19672150,19672681-19673301
          Length = 423

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 121 WHGSKIFKESKVLQEG*PEASQATREGG 204
           WH    FK S+    G PEA+ A  EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 193 ELLGWLQVTLLAKPLIP*KFWIHAKGGFVPG 101
           ELLGW QV   A  ++P +  + A   F PG
Sbjct: 423 ELLGWKQVLAQAANVLPKRRMVSATRRFPPG 453


>02_05_0773 +
           31654985-31655365,31655486-31655610,31655712-31656026,
           31656145-31656314,31656408-31656751
          Length = 444

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 62  RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFC 160
           ++AHRNG+K    T H++  G+ P+ + + + C
Sbjct: 121 QRAHRNGVKVLALTDHDTMAGV-PEAIESAKQC 152


>01_05_0410 +
           21914995-21915168,21915268-21915353,21915446-21915656,
           21915869-21915998,21916740-21916924,21917014-21917145,
           21917329-21917433
          Length = 340

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 155 TFDSLKILDPCQGWIRAWSSLAF*Y-HFCELCGFGYDLYDSL 33
           TF  L ++  CQGW + ++ L+  Y         G+  YD +
Sbjct: 280 TFQGLALIIRCQGWRQLFAGLSLNYVKVVPSVAIGFTTYDMM 321


>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
            20921184-20921263,20922759-20922875,20923089-20923136,
            20923509-20923601,20923881-20923958,20924114-20924218,
            20924543-20925212,20925253-20925350,20925887-20925963,
            20926035-20926117,20926208-20926287,20927060-20927139,
            20927698-20927743,20928709-20929181,20929234-20929579
          Length = 2139

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 6/25 (24%)
 Frame = -1

Query: 167  PSCKT------FDSLKILDPCQGWI 111
            P+C+T      F+S+K+L PC+ W+
Sbjct: 1448 PNCRTEKLYSYFESIKLLFPCEQWM 1472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,581,399
Number of Sequences: 37544
Number of extensions: 119057
Number of successful extensions: 393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)