Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10689
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    55   8e-09
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      33   0.029
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    31   0.16 
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   5.9  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    25   7.7  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   7.7  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    25   7.7  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   7.7  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 54.8 bits (126), Expect = 8e-09
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = +2

Query: 29  VPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKNERTFTEEQL 208
           VP +++FQT+DLFERRN  QV   +++  R   K        LGPK+A+K  R F+ +Q 
Sbjct: 77  VPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLAEKKPRVFSAQQQ 136

Query: 209 RAHNAELN-LQMG 244
           R     +N LQ G
Sbjct: 137 REFREGVNSLQYG 149


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 33.1 bits (72), Expect = 0.029
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 26  GVPEEEIFQTADLFERRNIPQVTLCLYAL 112
           G+PE   F+  D++E +N+P+V  C++AL
Sbjct: 115 GLPEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 47  FQTADLFERRNIPQVTLCLYAL 112
           F+T DL  R NIP+V  CL+AL
Sbjct: 145 FETKDLVRRFNIPKVIYCLHAL 166


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 328 FSTLISVFVHGRIWLNDFFTF 390
           FST I   VHG  WL D + F
Sbjct: 140 FSTPIPHMVHGIPWLQDLYIF 160


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 99  HNVTWGMLRLSKRSAVWN 46
           HN  WG  R  + +A+WN
Sbjct: 491 HNFVWGRFRELEHAAMWN 508


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 273 MTGLGGALLKPIWRFSSALWARSCSSVKVRSFLSAILGPS*GPVNSGCF*VILPKAYKHN 94
           MT LGG +   I     ++W+R  + V V  FL A+ GP    ++     +I  +  K  
Sbjct: 220 MTVLGGGI---IGLEMGSVWSRLGAEVTVVEFLPAVGGPMDADISKALSRIISKQGIKFK 276

Query: 93  VTWGML 76
            +  +L
Sbjct: 277 TSTKLL 282


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 438 LPNIF*VLVNGFC 476
           LPNIF +++NG C
Sbjct: 381 LPNIFPIIINGLC 393


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 307 QFTCGGCYRSHHDRTGRRLI 248
           Q  CG C   H+DR G R +
Sbjct: 186 QGPCGPCSEIHYDRIGNRTV 205


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 234 SKWASIRRLPVRSWWL 281
           S W   R+ P++SWW+
Sbjct: 110 SNWWLYRKSPLKSWWI 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,195
Number of Sequences: 5004
Number of extensions: 51523
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)