Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10689
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    31   0.85 
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001...    29   2.0  
07_03_0775 - 21413522-21413797,21414016-21414178,21414274-214143...    27   7.9  

>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 265 SGHGGFGNTRHM*TASKFFPIFSTLIS 345
           SGHGG G T+   TA  F+P+ + L+S
Sbjct: 433 SGHGGGGATKEAATAVAFYPVCAELLS 459


>01_05_0147 +
           18597194-18597643,18598347-18598681,18600073-18600147,
           18600325-18600427,18601554-18601642,18602953-18603064,
           18604093-18604146,18604271-18604319,18606236-18606347,
           18606389-18606436,18607000-18607327
          Length = 584

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 200 EQLRAHNAELNLQMGFNKAPPSPVMVASVTPA 295
           E LR+ +AE+    GF   PP P MVA    A
Sbjct: 282 EALRSRDAEVEADDGFLIGPPPPAMVAEAASA 313


>07_03_0775 -
           21413522-21413797,21414016-21414178,21414274-21414351,
           21415983-21416176
          Length = 236

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 170 ADKNERTFTEEQLRAHNAELNLQMGFNKAPPSPVMVASVTPAT 298
           A+KNE    +++L+A    L  Q+ F  A PS V    V PA+
Sbjct: 146 AEKNELRDEKQKLKAEKESLEQQIKFLNARPSFVPHPPVIPAS 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,810
Number of Sequences: 37544
Number of extensions: 313744
Number of successful extensions: 644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)