Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10689
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   4e-09
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)                    42   5e-04
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)                      40   0.001
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.001
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.017
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.030
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            33   0.16 
SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.38 
SB_47988| Best HMM Match : CH (HMM E-Value=0.47)                       28   6.1  
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   6.1  
SB_17915| Best HMM Match : 7tm_1 (HMM E-Value=6e-30)                   27   8.1  

>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +2

Query: 26  GVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKNERTFTEEQ 205
           GV + ++FQT DL+E+ N+  V  C++A+GR      +   PQLGPK + KN R FTE Q
Sbjct: 506 GVAKNDLFQTVDLYEKSNMWNVICCIHAVGRRAYSLGKDV-PQLGPKESTKNPRQFTERQ 564

Query: 206 LRAHNAELN-LQMG 244
           L      +N  QMG
Sbjct: 565 LNEGKTIINSFQMG 578


>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 31/63 (49%), Positives = 41/63 (65%)
 Frame = +2

Query: 26  GVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKNERTFTEEQ 205
           GVP+ ++FQT DL+E++N+P V   ++ALGR      + T   LGPK A  N R FTEEQ
Sbjct: 141 GVPKTDMFQTVDLYEKQNMPGVINGIHALGRKAHSTGK-TCLALGPKEASANPREFTEEQ 199

Query: 206 LRA 214
            RA
Sbjct: 200 RRA 202


>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
          Length = 195

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 28/63 (44%), Positives = 34/63 (53%)
 Frame = +2

Query: 26  GVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKNERTFTEEQ 205
           GV   + FQTADL++  N+   T C        Q   +   P LGPK A+ N R FTEEQ
Sbjct: 99  GVASGDQFQTADLYDNANM---TSC--------QLIKDLDIPTLGPKEAEANVREFTEEQ 147

Query: 206 LRA 214
           LRA
Sbjct: 148 LRA 150


>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
          Length = 89

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 25/63 (39%), Positives = 36/63 (57%)
 Frame = +2

Query: 26  GVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKNERTFTEEQ 205
           GV + ++FQT DL+E++N+        A G           PQLGPK A+ N R+F E++
Sbjct: 32  GVSKVDLFQTVDLYEKQNMAAAR----AKG--------LNCPQLGPKEAEANPRSFDEDK 79

Query: 206 LRA 214
           LRA
Sbjct: 80  LRA 82


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 32.3 bits (70), Expect(2) = 0.001
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 38   EEIFQTADLFERRNIPQVTLCLYALGRITQKH 133
            +++FQT  LFER+N+ QV   + A  R  +KH
Sbjct: 918  QDLFQTVYLFERQNLGQVISGIQAFARKVRKH 949



 Score = 26.6 bits (56), Expect(2) = 0.001
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 143  TGPQLGPKMADKNERTFTEE 202
            T P  GPK A+KN R F E+
Sbjct: 984  TVPLFGPKEAEKNPRNFPEQ 1003


>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +2

Query: 14  IKKYGVPEEEIFQTADLFERRNI 82
           IK YGV EE IF T DL+E+RN+
Sbjct: 221 IKSYGVQEEYIFVTVDLYEKRNV 243


>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 37

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = +2

Query: 149 PQLGPKMADKNERTFTEEQLRA 214
           P LGPK A+ N R FTEEQLRA
Sbjct: 10  PTLGPKEAEANVREFTEEQLRA 31


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +2

Query: 23  YGVPEEEIFQTADLFERRNIPQV 91
           +GV + ++FQT DL+E++NI QV
Sbjct: 713 FGVAKSDLFQTVDLYEKQNIQQV 735


>SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 372 QPNSSMHEY*YQCGKYWEKFRSSLHVAGVTEATMTGLGGALLKPIWRFS-SALWARSCSS 196
           QP   MH + + CG+Y  +    L     T  +  GL  ++++P WR +   LW   C +
Sbjct: 7   QPLIDMHVFAFPCGRYPYR-NKKLRFQTKTNTSGRGLSDSVVRPCWRGALYPLW--RCGA 63

Query: 195 VKV 187
           V+V
Sbjct: 64  VRV 66


>SB_47988| Best HMM Match : CH (HMM E-Value=0.47)
          Length = 133

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 7/21 (33%), Positives = 18/21 (85%)
 Frame = +2

Query: 50  QTADLFERRNIPQVTLCLYAL 112
           +T D+++++N+P++  C++AL
Sbjct: 112 ETTDIYDKKNMPKLIYCIHAL 132


>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 26  GVPEEEIFQTADLFERRNIPQV 91
           G+    +FQT DLFER+N+  V
Sbjct: 355 GLDRLNLFQTVDLFERQNVGMV 376


>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 89   VTLCLYALGRITQKHPEFTGPQLGPKMADKNERTFTEEQLRAHNAELNL 235
            + + L    R+TQK P   G +L  ++ D NER   +EQ  A  A++ L
Sbjct: 1153 IRVSLDVASRVTQKIPNEQGKELEHELDDLNER--LDEQGGATQAQMEL 1199


>SB_17915| Best HMM Match : 7tm_1 (HMM E-Value=6e-30)
          Length = 387

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +1

Query: 325 IFSTLISVFVHGRIWLNDFFTFKIILPITLCQRSCDRFYLIYFKY*STAFVTLIFVS 495
           I S  ++ F+   I L      K +L     QRSCD F ++ + + + +  T+ F++
Sbjct: 61  ILSLSLADFLDSGIALQMVVFIKYLLRFPWTQRSCDSFIVLLYTFRTASASTVTFMA 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,982,888
Number of Sequences: 59808
Number of extensions: 350329
Number of successful extensions: 785
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)