Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10689
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   1.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.6  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 347 TDINVENIGKNLEAVYMWRVL 285
           TDI+  N+  +L+ +Y W+ +
Sbjct: 18  TDIHSRNLTNSLKVIYEWKYI 38


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 319 FPIFSTLISVFVHGRI 366
           FP+   +I+V +HG++
Sbjct: 8   FPVLFVIINVLLHGQV 23


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +2

Query: 149 PQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKAPPSPVMVASVTP 292
           PQ   K  DK  +    + + A NAE ++ +     PP  V      P
Sbjct: 62  PQPISKRKDKEHKKKKSKTILAVNAEADITLKNAGTPPEAVSYNVAVP 109


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +2

Query: 149 PQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKAPPSPVMVASVTP 292
           PQ   K  DK  +    + + A NAE ++ +     PP  V      P
Sbjct: 62  PQPISKRKDKEHKKKKSKTILAVNAEADITLKNAGTPPEAVSYNVAVP 109


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 191 FTEEQLRAHNAELNLQMGFNK 253
           FT+++    + ELNLQ  FN+
Sbjct: 17  FTKQKKVKEDTELNLQTIFNE 37


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = +2

Query: 164 KMADKNERTFTEEQLRAHNAELNLQMGFNKAPPSPVMVASVTPATCKLLLN 316
           +MA       +E    +   +LNL       PP    V+ V+P +   L++
Sbjct: 349 QMASPEPPKSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVS 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,711
Number of Sequences: 438
Number of extensions: 4002
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)