Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10689
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25730.1 68415.m03084 expressed protein                             31   0.41 
At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SD...    29   1.6  
At1g53700.1 68414.m06110 protein kinase, putative similar to cuc...    28   5.0  
At3g45060.1 68416.m04857 high-affinity nitrate transporter, puta...    27   6.6  
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu...    27   8.7  
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate...    27   8.7  

>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 234 RFSSALWARSCSSVKVRSFLSAI 166
           RF + LW+RSC S  + SFLS I
Sbjct: 52  RFDNVLWSRSCPSPSLLSFLSTI 74


>At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198 short
           chain dehydrogenase/reductase SDR family
          Length = 279

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 328 FSTLISVFVHGRIWLNDFFTFKIIL 402
           +STL++V  H  +WL DFF  ++++
Sbjct: 253 YSTLMAVMYHMPLWLKDFFQKQVLM 277


>At1g53700.1 68414.m06110 protein kinase, putative similar to
           cucumber protein kinase CsPK3 [Cucumis sativus]
           gi|7416109|dbj|BAA93704
          Length = 476

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 182 ERTFTEEQLRAHNAELNLQMGFNKAPPSPVMVASVTPATCKLLLNFSQYFPH 337
           +RTFT    R+  A  +L + FN    S     S T ++    L+  +Y PH
Sbjct: 22  DRTFTSSSARSSLARSSLTLSFNDR-LSTATTPSTTTSSAATTLHHRRYDPH 72


>At3g45060.1 68416.m04857 high-affinity nitrate transporter,
           putative similar to trans-membrane nitrate transporter
           protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
           high-affinity nitrate transporter ACH1 [Arabidopsis
           thaliana] GI:3608362
          Length = 542

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 333 GKYWEKFRSSLHVAGVTEATMTGLGGALLKPIWRFSSALWAR 208
           G ++++F  +LH AG+  A+  G+     +P   ++S + AR
Sbjct: 314 GYFYDRFNLTLHTAGIIAASF-GMANFFARPFGGYASDVAAR 354


>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
           putative similar to cytosine-5 methyltransferase (METII)
           [Arabidopsis thaliana] GI:6523846; contains Pfam
           profiles PF01426: BAH domain, PF00145: C-5
           cytosine-specific DNA methylase
          Length = 1404

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 382 KNHSTKFFHARILISMWKILGKI*KQFT 299
           KNH TKF   R+L+S+     KI K F+
Sbjct: 182 KNHETKFVDNRVLVSLRDESRKIHKAFS 209


>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
            very low similarity to SP|Q9UUA2 DNA repair and
            recombination protein pif1, mitochondrial precursor
            {Schizosaccharomyces pombe}; weak hit to Pfam profile
            PF02178: AT hook motif
          Length = 1752

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 416  HSVIGKIILKVKKSFNQILPCTNTDINVENIGKNLEAVYMW 294
            + V G  ++     F Q+LP  N    VE +  +L A Y+W
Sbjct: 1405 NKVFGGKVVVFGGDFRQVLPVINGAGRVEIVMSSLNASYLW 1445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,347
Number of Sequences: 28952
Number of extensions: 261522
Number of successful extensions: 541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)