Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10688
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   4.5  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    22   4.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.5  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 185 KPEIRKAIHVGDIIYTYVNVTVNLRWPRTSLAVQKLCTKS 304
           +P+I   + V + +    N+  N  +   SL +  L TKS
Sbjct: 42  QPKIEGKVQVPEALKKIYNIQNNFEYDTASLPLPGLYTKS 81


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 378 FRCDHARHHLIQVSTVCQH 322
           +RC+H     +QV+ + +H
Sbjct: 38  YRCEHCDRQFVQVANLRRH 56


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 378 FRCDHARHHLIQVSTVCQH 322
           +RC+H     +QV+ + +H
Sbjct: 191 YRCEHCDRQFVQVANLRRH 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,091
Number of Sequences: 336
Number of extensions: 3534
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)