Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10688
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.1  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    27   3.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   3.7  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    27   3.7  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
 Frame = +1

Query: 304 LLESYRVLTYCGNLDQMMPCV---------VTSEHYRTWKWSSSDDFIKAVRNPYMFKNR 456
           +L++YR   + G +  ++PC          +    Y   +  SS DFI+ +RN Y ++N 
Sbjct: 220 ILQAYRQAAFPG-VQAIIPCFLKMVQIDVPIDIASYAMIEKDSSIDFIEFIRNKYQYRNF 278

Query: 457 LAGYHKTGGNLTELIIREPVT 519
                KT   L  ++   P T
Sbjct: 279 FMAQVKTLSFLAYILRTHPNT 299


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 226 IHVRERYRESKMAPDFLSSSKALYEELLESYRVLTYCGNLDQ 351
           +H+R  + E     DF+   + L  + LES  ++ Y   +D+
Sbjct: 460 LHIRASFEEELRGMDFVELEEQLPGQTLESKPMIIYAQEMDE 501


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 259 MAPDFLSSSKALYEELLESYRVLTYCGNLDQMMPCV-VTSEHYRTWKWSSSDD 414
           M  +  S  + LY  L+  Y + T+C ++D M  CV +  + + ++ W +S +
Sbjct: 716 MLENCASKEELLYVCLI--YTIWTHCTDMDSMDNCVYLCIQKFESYGWGASSE 766


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 8   AIQPLLTALSDDIAANRSVEAKNRFMGLVSLLLYLSHQTHAYN-FLEDRVVLENHEKFLN 184
           AIQ +L +   ++  +RS    +  + ++S +L    + + Y     DRV    +E  +N
Sbjct: 308 AIQEVLWSHVVEVIQSRSGLPLDCIVSILSSILNFFLRCYPYKPQYADRVFQYINEHIIN 367

Query: 185 KPEIRKAIH 211
           +P +R A+H
Sbjct: 368 QPSLRSALH 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,784
Number of Sequences: 5004
Number of extensions: 59024
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)