Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10688
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0265 + 28783230-28783316,28784381-28785196 40 0.003
01_01_0809 + 6294991-6295044,6295099-6296334 39 0.004
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582... 38 0.008
02_01_0104 - 767490-767627,768025-768158,768971-769229,769315-76... 36 0.026
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 34 0.14
01_06_0536 + 30068881-30070383 32 0.42
12_02_0899 - 24142210-24142293,24142589-24142634,24142773-241428... 30 1.7
12_01_0779 + 7129879-7130398,7130585-7130664 30 1.7
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 30 1.7
06_03_1336 - 29424470-29424897,29425243-29429653 30 1.7
02_03_0267 - 17081551-17082636,17084935-17085252 30 2.2
11_04_0229 + 15111760-15111778,15112797-15112834,15113002-151131... 28 6.8
02_05_0351 + 28230695-28230882,28230998-28231143,28231264-282313... 28 6.8
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 28 9.0
09_01_0109 + 1711303-1711544,1711626-1711923 28 9.0
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 28 9.0
07_01_0647 + 4862502-4863260 28 9.0
05_07_0088 - 27612680-27612781,27612887-27612977,27613128-276131... 28 9.0
>05_07_0265 + 28783230-28783316,28784381-28785196
Length = 300
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/82 (31%), Positives = 35/82 (42%)
Frame = +1
Query: 259 MAPDFLSSSKALYEELLESYRVLTYCGNLDQMMPCVVTSEHYRTWKWSSSDDFIKAVRNP 438
M D + S K E LL RVL Y G D V T R +W F+ A R
Sbjct: 180 MHGDVMKSVKPEVEALLRGTRVLLYQGIRDLRDGVVSTEAWMRELEWDGLPAFLDADRAV 239
Query: 439 YMFKNRLAGYHKTGGNLTELII 504
+ LAGY + G L+ +++
Sbjct: 240 WRIGEELAGYVQRSGPLSHVVV 261
>01_01_0809 + 6294991-6295044,6295099-6296334
Length = 429
Score = 39.1 bits (87), Expect = 0.004
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 MAPDFLSSSKALYEELLESYRVLTYCGNLD-QMMPCVVTSEHY-RTWKWSSSDDFIKAVR 432
M D + S K E LL RVL Y G D + VV++E + R KW F+ A R
Sbjct: 307 MHGDVMKSVKPGVEALLRGTRVLLYQGIRDLNLRDGVVSTEAWMRELKWDGLTAFLVADR 366
Query: 433 NPYMFKNRLAGYHKTGGNLTELII 504
+ LAGY + G L+ +I+
Sbjct: 367 AVWRIGEELAGYVQRSGPLSHVIV 390
>07_03_0369 -
17356806-17356934,17357145-17357278,17357989-17358247,
17358322-17358410,17358644-17358794,17358889-17359032,
17359358-17359477,17359595-17359769,17359842-17360215
Length = 524
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +1
Query: 259 MAPDFLSSSKALYEELLES-YRVLTYCGNLDQMMPCVVTSEHYRTWKWSSSDDFIKAVRN 435
M D++ + + ELLE+ +VL Y G D + + S + +WS + F+ +
Sbjct: 401 MLLDWMRNLEVGIPELLENDIKVLIYAGEYDLICNWLGNSRWVNSMEWSGKEAFVSSSEE 460
Query: 436 PYMFKNRLAGYHKTGGNLTELIIREPVTWRPWTRP 540
P+ + AG K+ G L+ L + + P +P
Sbjct: 461 PFTVDGKEAGILKSYGPLSFLKVHDAGHMVPMDQP 495
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 158 LENHEKFLNKPEIRKAIHVGDIIYTYVNVTV 250
L N EKFL +R+++ VGDI + + TV
Sbjct: 367 LSNMEKFLQLKSVRESLGVGDIQFVSCSPTV 397
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 510 AGHMAPMDTPDQTAYFITQWT 572
AGHM PMD P + +WT
Sbjct: 486 AGHMVPMDQPKVALEMLMRWT 506
>02_01_0104 -
767490-767627,768025-768158,768971-769229,769315-769403,
769624-769774,769860-770003,770611-770730,771490-771658,
771789-772087
Length = 500
Score = 36.3 bits (80), Expect = 0.026
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +1
Query: 259 MAPDFLSSSKALYEELLES-YRVLTYCGNLDQMMPCVVTSEHYRTWKWSSSDDFIKAVRN 435
M D++ + + LLE VL Y G D + + S + +WS DF+ + +
Sbjct: 374 MLTDWMRNLEVGIPALLEDGINVLIYAGEYDLICNWLGNSRWVHSMEWSGQKDFVSSHES 433
Query: 436 PYMFKNRLAGYHKTGGNLTELIIREPVTWRPWTRP 540
P++ AG K+ G L+ L + P +P
Sbjct: 434 PFVVDGAEAGVLKSHGPLSFLKVHNAGHMVPMDQP 468
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 478 GGNLTELIIREPVTWRPWTRPTKQRTS*LNGPTTNRWTNRSE 603
GG+ + +R P P + T QRTS G T +RWT R E
Sbjct: 107 GGSSSARAVRSPSPVLPLVQGTGQRTSCYRGVTRHRWTGRYE 148
>01_06_0536 + 30068881-30070383
Length = 500
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 554 VRCLVGRVHGRHVTGSRMISSVRLPPVLWYPANLFLNM*GFRTALMKSSDEL 399
++ +V HGR +T M+ +R+ + Y FL+ +RT + DE+
Sbjct: 45 IQAIVEEAHGRQITNQAMLLQLRMVRAVMYRGYYFLDNFRYRTVQAHAQDEV 96
>12_02_0899 -
24142210-24142293,24142589-24142634,24142773-24142886,
24143445-24143566,24144361-24144480,24144581-24144664,
24144813-24144914,24145589-24145604,24147929-24148329
Length = 362
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 268 DFLSSSKALYEELLESYRVLTYCGNLDQMMPCVVTSEHYRTWKWSSSDDF 417
D S+ K + + YR L Y G+ D M+P + T R+ +S DD+
Sbjct: 260 DIKSNIKFHHNVTTKGYRALVYSGDHDAMIPFLGTQAWVRSLNFSVVDDW 309
>12_01_0779 + 7129879-7130398,7130585-7130664
Length = 199
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 498 DHPRAGHMAPMDTPDQTAYFITQWTHNEPLDQPIGTTIDLKY 623
DHP++ H P P + I W + P D P LKY
Sbjct: 145 DHPQSHHSPPPPPPPMPSPSIPNWKISSPGDSPDEVKARLKY 186
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +1
Query: 268 DFLSSSKALYEELLESYRVLTYCGNLDQMMPCVVTSEHYRTWKWSSSDDFIKAVRNPYMF 447
D SS + + YR L Y G+ D ++P + T R+ +S D++ P+
Sbjct: 330 DIKSSVRYHLDLTTRGYRSLIYSGDHDMIIPFIGTQAWIRSLNFSVVDEW-----RPWFV 384
Query: 448 KNRLAGYHKT-GGNLT 492
++AGY ++ NLT
Sbjct: 385 DGQVAGYIRSYSNNLT 400
>06_03_1336 - 29424470-29424897,29425243-29429653
Length = 1612
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +1
Query: 229 HVRERYRESKMAPDFLSSSKALYE--ELLESYRVLTYCG--NLDQMMPCVVTSEHYRTWK 396
HV R R+ +M + LS+ + + + L + +L Y +L Q + C +WK
Sbjct: 1525 HVSTRIRKRRMVAEALSNRRWIKDISGALGTQAILEYLKLWSLIQSVDCSSAEPDSLSWK 1584
Query: 397 WSSSDDFIKAVRNPYMFKNRLA 462
W SS + +F R+A
Sbjct: 1585 WESSSKYTSKSTYRALFLGRIA 1606
>02_03_0267 - 17081551-17082636,17084935-17085252
Length = 467
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 468 PQNRR*SNGADHPRAGHMAPMDTPDQTAYFITQWTHNEPLDQPIGTTIDLKYVEEYV 638
P R GA+ R+GH P+Q I+ +P+ G T D ++++E++
Sbjct: 61 PPKDRPGAGAERRRSGHAEAAAVPEQFLCPISSEIMRDPVVLASGQTYDRRFIQEWL 117
>11_04_0229 +
15111760-15111778,15112797-15112834,15113002-15113103,
15114311-15114391,15114819-15114890,15115020-15115138,
15115426-15115539,15116599-15116647,15116803-15116886
Length = 225
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 310 ESYRVLTYCGNLDQMMPCVVTSEHYRTWKWSSSDDFIKAVRNPYMFKNRLAGYHKT--GG 483
+ YR + Y G+ D +P + T R S +DD+ P+ ++AG+ ++
Sbjct: 136 KGYRAIIYSGDHDSRVPSISTQAWIRLLNLSIADDW-----RPWYVDGQVAGFTRSFASN 190
Query: 484 NLTELIIR 507
NLT ++
Sbjct: 191 NLTYATVK 198
>02_05_0351 +
28230695-28230882,28230998-28231143,28231264-28231343,
28231805-28231907,28233027-28233050,28233246-28233418,
28233742-28233888,28234011-28234082,28234387-28234505,
28234626-28234739,28234994-28235039,28235169-28235252
Length = 431
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = +1
Query: 268 DFLSSSKALYEELLESYRVLTYCGNLDQMMPCVVTSEHYRTWKWSSSDDFIKAVRNPYMF 447
D SS + + YR L Y G+ D ++P T R+ +S DD+ +
Sbjct: 329 DLPSSIECHFNVTTRGYRALVYSGDHDPIVPFSGTQAWIRSLNFSIVDDW-----RAWHL 383
Query: 448 KNRLAGYH-KTGGNLTELIIREPVTWRPWTRP 540
+ AG+ K NLT I+ P RP
Sbjct: 384 DGQAAGFTIKYANNLTFATIKGGCHIPPENRP 415
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 702 FIYFALDFQYIYFKTLLMLIS*HILLRISNRW 607
F Y +DF+++Y+ L L S H++L RW
Sbjct: 198 FFYVPIDFKFVYYSNLGFL-SFHLVLPDLTRW 228
>09_01_0109 + 1711303-1711544,1711626-1711923
Length = 179
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 385 RTWKWSSSDDFIKAVRNPYMFKNRLAGYHKTGG 483
R W+WS S F K Y N A +++ GG
Sbjct: 29 RRWRWSGSSGFSKFKSENYSPFNAAATFNRCGG 61
>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -3
Query: 682 LSIHLLQDVVNVNFLTYSSTYFKSMVVPIG-WSN 584
+++ L V ++++L+Y + F SM +P+G WS+
Sbjct: 1729 IAVSSLAHVTSLSYLSYDAEGFDSMTMPLGSWSS 1762
>07_01_0647 + 4862502-4863260
Length = 252
Score = 27.9 bits (59), Expect = 9.0
Identities = 8/39 (20%), Positives = 23/39 (58%)
Frame = +1
Query: 379 HYRTWKWSSSDDFIKAVRNPYMFKNRLAGYHKTGGNLTE 495
H+ W W++ + + +A+ M ++++AG+ + +L +
Sbjct: 135 HFSMWMWAADEAYEEALEELDMLRSKIAGWEERYNHLAK 173
>05_07_0088 -
27612680-27612781,27612887-27612977,27613128-27613198,
27613978-27614196
Length = 160
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 501 HPRAGHMAPMDTPDQTAYFITQWTHNEPLDQPIGT 605
HP + H P+ P+++ Y + N+P+D + +
Sbjct: 114 HPSSDHTLPLFEPEESIYLRRHYGLNQPVDHSMNS 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,487,492
Number of Sequences: 37544
Number of extensions: 379608
Number of successful extensions: 914
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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