Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10688
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0) 31 0.98
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27) 30 1.7
SB_51490| Best HMM Match : Lir1 (HMM E-Value=8.3) 29 3.0
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15) 29 4.0
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 29 4.0
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31) 29 4.0
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 29 4.0
SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30) 29 4.0
SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 29 4.0
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44) 29 4.0
SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 29 4.0
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 29 5.2
SB_36089| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_48312| Best HMM Match : OAR (HMM E-Value=2.8) 28 9.1
SB_19211| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
Length = 446
Score = 31.1 bits (67), Expect = 0.98
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Frame = +1
Query: 268 DFLSSSKALYEELLESYRVLTYCGNLDQMMPCVVTSEHYRTWKWSSSDDFIKAVRNPYM- 444
DF+ + LL V+ Y G LD + + KW+ DDF+ R P
Sbjct: 337 DFMRPVISDVSYLLNKINVVIYQGQLDMICDTNGAENWMKKLKWNGLDDFLNTPRQPLYP 396
Query: 445 ---FKNRLAG-YHKTGGNLT 492
K + G + K GNL+
Sbjct: 397 PSGLKTKQTGAFRKKYGNLS 416
>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
Length = 1154
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 590 VQRFVVGPLSYEVRCLVGRVHGRHVTGSRM 501
V + V GP+SY V + GR H RHV R+
Sbjct: 1019 VIKMVTGPVSYTVVAMDGREHRRHVDHLRL 1048
>SB_51490| Best HMM Match : Lir1 (HMM E-Value=8.3)
Length = 205
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 649 VNFLTYSSTYF-KSMVVPIGWSNGSLWVH*VMKYAVWSGVSMG 524
VNF+ YS T+F + P+ + L VH V++ A+ G S G
Sbjct: 140 VNFVIYSKTFFLQDACGPLQFYAADLQVHEVLQPAIVKGASTG 182
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 578 VVGPLSYEVRCLVGRVHGRHV 516
V GPLSYEV + GR+ RH+
Sbjct: 1721 VTGPLSYEVELIDGRLVRRHI 1741
>SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 578 VVGPLSYEVRCLVGRVHGRHV 516
V GPLSYEV + GR+ RH+
Sbjct: 116 VTGPLSYEVELIDGRLVRRHI 136
>SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15)
Length = 385
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 578 VVGPLSYEVRCLVGRVHGRHV 516
V GPLSYEV + GR+ RH+
Sbjct: 283 VTGPLSYEVELIDGRLVRRHI 303
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 578 VVGPLSYEVRCLVGRVHGRHV 516
V GPLSYEV + GR+ RH+
Sbjct: 483 VTGPLSYEVELIDGRLVRRHI 503
>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 578 VVGPLSYEVRCLVGRVHGRHV 516
V GPLSYEV + GR+ RH+
Sbjct: 575 VTGPLSYEVELIDGRLVRRHI 595
>SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31)
Length = 351
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 578 VVGPLSYEVRCLVGRVHGRHV 516
V GPLSYEV + GR+ RH+
Sbjct: 243 VTGPLSYEVELIDGRLVRRHI 263
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 578 VVGPLSYEVRCLVGRVHGRHV 516
V GPLSYEV + GR+ RH+
Sbjct: 1032 VTGPLSYEVELIDGRLVRRHI 1052
>SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 682
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 578 VVGPLSYEVRCLVGRVHGRHV 516
V GPLSYEV + GR+ RH+
Sbjct: 574 VTGPLSYEVELIDGRLVRRHI 594
>SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 246
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 578 VVGPLSYEVRCLVGRVHGRHV 516
V GPLSYEV + GR+ RH+
Sbjct: 138 VTGPLSYEVELIDGRLVRRHI 158
>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
Length = 1021
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 167 HEKFLNKPEIRKAIHVGDIIYTYVNVTVNLRWPRTSLAVQKLCTKS 304
++KF+N+ E+ K + I Y+ VTVNL A +CT S
Sbjct: 768 YDKFINRIELEKEVE--SISYSNAGVTVNLTNGNVYTAEHAICTFS 811
>SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 195
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 578 VVGPLSYEVRCLVGRVHGRHV 516
V GPLSYEV + GR+ RH+
Sbjct: 87 VTGPLSYEVELIDGRLVRRHI 107
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 20 LLTALSDDIAANRSVEAKNRFMGLVSLLLYLSHQTH 127
LLT ++ N VE K+RFM L ++ H TH
Sbjct: 412 LLTLANNSCIKNTFVELKDRFMKLYKRKAHVHHYTH 447
>SB_36089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 221 IIYTYVNVTVNLRWPRTSLA-VQKLCTKSCWRAIGC*HT 334
++Y+YV +VN R+ SL ++ CT S + + C H+
Sbjct: 14 VVYSYVMASVNERFKTLSLRHTRRFCTVSNLKRLSCTHS 52
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +1
Query: 400 SSSDDFIKAVR-NPYMFKNRLAG---YHKTGGNLTELIIREPVTWRPWTRPTKQRTS*LN 567
+SS D +K++ + + +LA ++K NL + + P ++P RP++ +S N
Sbjct: 1511 ASSSDLVKSLNWDSLEVRRQLAQLCLFYKIRNNLVNIAL--PQQFQPNLRPSRTNSSKYN 1568
Query: 568 GPTTNRWTNRSEL 606
+N+W R+++
Sbjct: 1569 QIQSNKWLQRTKV 1581
>SB_48312| Best HMM Match : OAR (HMM E-Value=2.8)
Length = 87
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 520 WRPWTRPTKQRTS*LNGPTTNRWTNRSEL 606
WRP TR + R S GP+T RW R L
Sbjct: 56 WRPNTRSSFSRPS---GPSTRRWRPRHRL 81
>SB_19211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 520 WRPWTRPTKQRTS*LNGPTTNRWTNRSEL 606
WRP TR + R S GP+T RW R L
Sbjct: 193 WRPNTRSSFSRPS---GPSTRRWRPRHRL 218
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,547,431
Number of Sequences: 59808
Number of extensions: 447692
Number of successful extensions: 1406
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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