Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10688
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    28   6.0  
U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AF000266-8|AAL65799.1|   92|Caenorhabditis elegans Hypothetical ...    28   8.0  

>Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.6 protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +1

Query: 265 PDFLSSSKALYEELLESYRVLTYCGN-LDQMMPCV-----VTSEHYRTW 393
           P+F+     L  EL   Y +  YCGN L+  + CV     V S +YR W
Sbjct: 124 PNFVFLLIILSSELFNQYMLFGYCGNVLETPLECVNYFCAVNSCYYRYW 172


>AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical
           protein T23E7.2c protein.
          Length = 885

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 364 RTASSDPGFHSMSTPYSSPAALRTELLNC*GSPGPS*IHGNVHVRVYYVSDVNCF 200
           R+  S   ++S    +SSPAA R++L     S     IH N+ + +Y  S    F
Sbjct: 709 RSQRSASNYYSFLLTWSSPAATRSQLSIAPRSHSSPPIHPNISITMYLFSKKRIF 763


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 161 ENHEKFLNKPEIRKAIHVGDIIYTY 235
           ++H  +LN PE++KA+ + D +  Y
Sbjct: 332 DDHFPYLNSPEVKKALRIPDYVPKY 356


>U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical
           protein F41C3.5 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 510 AGHMAPMDTPDQTAYFITQWTHNEPL 587
           AGHMAP     Q  Y + Q+ +N PL
Sbjct: 444 AGHMAPQWRAPQMYYAVQQFLNNHPL 469


>AF000266-8|AAL65799.1|   92|Caenorhabditis elegans Hypothetical
           protein W08F4.12 protein.
          Length = 92

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 593 LVQRFVVGPLSYEVRCLVGRVHGRHVTGSRMISSVRL 483
           L+++F +  LS + +  V RV+G H + S   S++RL
Sbjct: 28  LIEQFSISLLSAKAKTAVARVNGNHESVSFSDSTIRL 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,891,660
Number of Sequences: 27780
Number of extensions: 330774
Number of successful extensions: 891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)