Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10686X
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    82   2e-17
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    81   6e-17
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   0.83 
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   1.9  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   3.4  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   3.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   4.4  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   4.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    24   5.9  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    24   5.9  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    24   5.9  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 82.2 bits (194), Expect = 2e-17
 Identities = 35/56 (62%), Positives = 45/56 (80%)
 Frame = +3

Query: 93  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEGSLADLKR 260
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ E SLADL++
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQK 75



 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 272 ERSVRKFRLIAEYVQGRNVLCNFHG 346
           E S RK +L  E +QG++ L +F+G
Sbjct: 78  EHSFRKVKLRVEDIQGKSCLTSFNG 102


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 80.6 bits (190), Expect = 6e-17
 Identities = 34/56 (60%), Positives = 45/56 (80%)
 Frame = +3

Query: 93  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEGSLADLKR 260
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ E SLADL++
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQK 75



 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 272 ERSVRKFRLIAEYVQGRNVLCNFHGM 349
           E + RK +L  E +QG++ L +F+G+
Sbjct: 78  EHAFRKVKLRVEDIQGKSCLTSFNGL 103


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 251 ISQGPFENSSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDI 126
           I  GP ++ S  S  SNF S+    K+    PL +++ S D+
Sbjct: 122 ILNGPLDSLSKPSVPSNFNSMFPSSKQEGPSPLLDNQPSSDL 163


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 324 FRPCTYSAINLNLRTDLSAPVSALDQPGTLRKLFPSI 214
           + P   + +N +L    ++P S  +QP T++   PS+
Sbjct: 212 YPPANDTTVNSSLPHSFASPSSTFEQPHTVQSRAPSV 248


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 286 ADRPFRASVRFRSARDPSKTLPFNPS 209
           A +P  +S   RSA  P+ +LP NPS
Sbjct: 203 ASQPVPSSTFSRSAVVPNPSLPLNPS 228


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 300 INLNLRTDLSAPVSALDQPGTLRKLFPSILPKQFSFPGYG*QAWC 166
           I+LN+ +D   P SA         +FPS +   F    YG + WC
Sbjct: 497 ISLNI-SDSKIPTSAYMPSYYSAVIFPSSISSIFQKYNYGGKYWC 540


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 161 LPLAEHRRSLDIVPIFASEWVDNLLLNTFFTALGQA 54
           +P  E RR+L     F S+  DN++  TFF A  +A
Sbjct: 845 VPAEEGRRTLRTPTFFVSQ-DDNIVHTTFFPANSEA 879


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 212 FRSNFRSLGTVDKRGADLPLAEH 144
           F  + RSL +VD     LPL EH
Sbjct: 44  FSRSHRSLSSVDVSSPSLPLREH 66


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 92 LLLNTFFTALGQAFIFPDRHVQ 27
          LL+  F+ + G ++I PD H+Q
Sbjct: 14 LLILRFWFSQGSSYIHPDEHLQ 35


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 306 SAINLNLRTDLSAPVSALDQPGT 238
           SA++L+  T+L+ P+S +  PG+
Sbjct: 377 SAVSLSDTTNLNTPISDIPSPGS 399


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 171 TLVNRTQGTKIASEGLKGRVFEGSL 245
           TL+N TQG  I  E   G  F G L
Sbjct: 5   TLLNATQGRPILVELKNGETFNGHL 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,946
Number of Sequences: 5004
Number of extensions: 26284
Number of successful extensions: 81
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)