Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10686X
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 92 1e-19
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 92 1e-19
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 91 2e-19
06_03_1330 - 29375494-29376912 27 3.1
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 27 3.1
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547... 27 3.1
11_04_0407 + 17335773-17335777,17335930-17336635,17336844-173375... 27 4.0
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 26 9.3
04_01_0473 + 6175882-6176125,6176458-6176539,6176798-6176907,617... 26 9.3
02_02_0115 + 6946945-6947087,6947511-6947748 26 9.3
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 91.9 bits (218), Expect = 1e-19
Identities = 42/54 (77%), Positives = 48/54 (88%)
Frame = +3
Query: 96 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEGSLADLK 257
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFE SLADL+
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74
Score = 34.7 bits (76), Expect = 0.020
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +2
Query: 272 ERSVRKFRLIAEYVQGRNVLCNFHGM 349
+++ RK RL AE VQG+NVL NF GM
Sbjct: 78 DQAYRKIRLRAEDVQGKNVLTNFWGM 103
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/54 (75%), Positives = 49/54 (90%)
Frame = +3
Query: 96 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEGSLADLK 257
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFE SLADL+
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74
Score = 35.5 bits (78), Expect = 0.012
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 272 ERSVRKFRLIAEYVQGRNVLCNFHGM 349
+++ RK RL AE VQGRNVL NF GM
Sbjct: 78 DQAYRKVRLRAEDVQGRNVLTNFWGM 103
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 91.5 bits (217), Expect = 2e-19
Identities = 41/54 (75%), Positives = 48/54 (88%)
Frame = +3
Query: 96 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEGSLADLK 257
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFE SLADL+
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74
Score = 34.7 bits (76), Expect = 0.020
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +2
Query: 272 ERSVRKFRLIAEYVQGRNVLCNFHGM 349
+++ RK RL AE VQG+NVL NF GM
Sbjct: 78 DQAYRKIRLRAEDVQGKNVLTNFWGM 103
>06_03_1330 - 29375494-29376912
Length = 472
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 268 ASVRFRSARDPSKTLPFNPS 209
A+ RFR+A+ P LPFNP+
Sbjct: 54 ATARFRAAQPPWLMLPFNPT 73
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 236 FENSSLQSFRSNFRSLGTVDKRGADLPLAE 147
FENS LQSF +L + K+G P E
Sbjct: 217 FENSELQSFTDKIENLSSSQKKGYFKPKRE 246
>03_02_0078 +
5476288-5476626,5477474-5477670,5477750-5477885,
5478055-5478132,5478227-5478280,5478466-5478650,
5478781-5480374,5480506-5480700,5480753-5480904,
5481213-5481486,5481597-5481733,5482219-5482258,
5482773-5483261,5483605-5484168
Length = 1477
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 177 VNRTQGTKIASEGLKGRVFEGSLADLKRTLARKG 278
V Q +KIASE + +F S K+TLA++G
Sbjct: 303 VGGVQTSKIASEANREFIFSSSFTGDKQTLAQRG 336
>11_04_0407 +
17335773-17335777,17335930-17336635,17336844-17337542,
17340710-17340724,17341479-17342126
Length = 690
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 335 CRAHSVLAHIRRLI*ICGP-TFPRQCPL 255
CR H +L+HIR I + TFP CP+
Sbjct: 274 CRDHCLLSHIRYAIRLRKKVTFPDMCPV 301
>07_01_0736 -
5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 345 PWKLQSTFRPCTYSAINLNLRTDLSAPVSALDQPGTL 235
PW LQS YS+I+ L PVS+ D P L
Sbjct: 844 PWLLQSARHSLAYSSISF-LPASHVTPVSSTDCPSGL 879
>04_01_0473 +
6175882-6176125,6176458-6176539,6176798-6176907,
6177234-6177388,6177473-6178212,6178298-6178549,
6178960-6178993,6179071-6179253,6179533-6179637
Length = 634
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 236 FENSSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLD 129
F+N + NF+ G DLP EHR S D
Sbjct: 515 FQNKRVVMAAYNFKVNGRYRTNTEDLPRLEHRTSFD 550
>02_02_0115 + 6946945-6947087,6947511-6947748
Length = 126
Score = 25.8 bits (54), Expect = 9.3
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 290 ICGPTFPRQC 261
+CGP FPRQC
Sbjct: 63 MCGPPFPRQC 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,536,744
Number of Sequences: 37544
Number of extensions: 184299
Number of successful extensions: 463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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