Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10686X
(349 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0) 29 1.0
SB_2071| Best HMM Match : REJ (HMM E-Value=1.4e-05) 29 1.0
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_59024| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-19) 29 1.4
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15) 27 4.2
SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 27 5.5
SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 26 9.7
SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26) 26 9.7
>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1433
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -3
Query: 233 ENSSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDI-VPIFASEWVDNLLLNTFFTALG 60
++ S S SN + G+ +P+A R +LDI VP+ A++ + + + F LG
Sbjct: 151 DDKSASSVESNVMEIDLASDSGSRIPVAGLREALDIRVPVNAAQQANQIQEPSNFMKLG 209
>SB_2071| Best HMM Match : REJ (HMM E-Value=1.4e-05)
Length = 592
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -3
Query: 233 ENSSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDI-VPIFASEWVDNLLLNTFFTALG 60
++ S S SN + G+ +P+A R +LDI VP+ A++ + + + F LG
Sbjct: 528 DDKSASSVESNVMEIDLASDSGSRIPVAGLREALDIRVPVNAAQQANQIQEPSNFMKLG 586
>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 93 IVDPFTRKDWYDVKAPSMFSKRQ 161
+V+P+ KDW D SMFS RQ
Sbjct: 98 LVEPWRWKDWEDFTQSSMFSGRQ 120
>SB_59024| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-19)
Length = 423
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 73 KKVLRRRLSTHSL---AKIGTMSRLRLCSARGKSAPRLSTV 186
KK+LRR+LS S + G SRLR C + + R+ +V
Sbjct: 374 KKILRRQLSDSSFRSRSSSGFASRLRYCGSNQSESSRVQSV 414
>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 251 ISQGPFENSSLQSFRSNFRSLGTVDKRGADLPLAEHRRS 135
I GP EN L + S F+ G DK+G + RRS
Sbjct: 144 IVSGPMENMELDNSLSGFKISGLSDKKGLMQSTSVGRRS 182
>SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15)
Length = 624
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 176 KRGADLPLAEHRRSLDIVPIFASEWVDN 93
K+GA + LA RR+LD+V ++ +D+
Sbjct: 1 KKGAPICLAARRRNLDVVEFLLTQQLDH 28
>SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 182 VDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLNTFFTALGQAFIFPDR 36
VD + + +++ D+ PIF + V LLL T FT L + DR
Sbjct: 159 VDNQFVPFQTLQTKKAFDVEPIFNGKDVFLLLLWTLFTYLQVISVLNDR 207
>SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 307 FGD*SEFADRP-FRASVRFRSARDPSKTLPFNPSEAI 200
F D +++A++ RAS + ++R P +L F PS +I
Sbjct: 601 FVDYADYAEKAKLRASTQVHNSRSPDPSLSFKPSLSI 637
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 235 SKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLRVNGS 98
++T +NP + P ++ T ++ NI A TS+++ +NGS
Sbjct: 511 TQTTHWNPPQTTQTPTLQPTRLLTPAQPSNITQAQTSHKTTEINGS 556
>SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 339 KLQSTFRPCTYSAINLN 289
KLQ FRP Y INLN
Sbjct: 556 KLQPNFRPDKYKVINLN 572
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 177 VNRTQGTKIASEGLKGRVFEGSLA 248
V TQ K+ EG++GR + G +A
Sbjct: 1722 VRNTQSWKVVFEGIRGRNYMGDIA 1745
>SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26)
Length = 840
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 336 LQSTFRPCTYSAINLNLRTDLSAPVSALDQPGTLRKLFPS 217
LQ R C A+ + RT+ +PV L G L L PS
Sbjct: 185 LQVRVRECDRDAMRFHWRTNEHSPVQTLRFTGALFGLAPS 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,988,831
Number of Sequences: 59808
Number of extensions: 209698
Number of successful extensions: 544
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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