Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10686X
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   0.78 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   4.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   4.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   9.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 0.78
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 131 QGSVYVQQEASRHH--ACQPYPGNENCFG 211
           Q S+Y+QQ+  +HH  +   +  N+  FG
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHASNQERFG 122


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 104 WVDNLLLNTFFTALGQAFIF 45
           +++++ LNT++  L QAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 104 WVDNLLLNTFFTALGQAFIF 45
           +++++ LNT++  L QAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 113 ASEWVDNLLLNTFFTALGQAFIFPDRHVQ 27
           A  W D +LLN    A+    + P+ H++
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLK 367


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 113 ASEWVDNLLLNTFFTALGQAFIFPDRHVQ 27
           A  W D +LLN    A+    + P+ H++
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLK 367


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 113 ASEWVDNLLLNTFFTALGQAFIFPDRHVQ 27
           A  W D +LLN    A+    + P+ H++
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLK 367


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 294 LNLRTDLSAPVSAL 253
           LNLRTD+S+  S++
Sbjct: 365 LNLRTDISSSSSSI 378


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +3

Query: 141 SMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEGS 242
           S     + G  L+     TK++S+G+ G   E +
Sbjct: 355 SFVLNNRAGRFLILTESDTKLSSQGILGEDVENN 388


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 234 EGSLADLKRTLARKGRSANSD 296
           EGS  D  RTL ++G+   ++
Sbjct: 731 EGSGGDSLRTLLQRGQETGAE 751


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,124
Number of Sequences: 438
Number of extensions: 1936
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)