Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10686X
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...    93   5e-20
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)            91   2e-19
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   2.0  
At4g25240.1 68417.m03632 multi-copper oxidase type I family prot...    27   4.5  
At3g29270.2 68416.m03675 expressed protein                             26   6.0  
At3g29270.1 68416.m03674 expressed protein                             26   6.0  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 43/54 (79%), Positives = 49/54 (90%)
 Frame = +3

Query: 96  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEGSLADLK 257
           VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK RVFE SLADL+
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +2

Query: 272 ERSVRKFRLIAEYVQGRNVLCNFHGM 349
           + + RK RL AE VQGRNVLC F GM
Sbjct: 78  DNAYRKIRLRAEDVQGRNVLCQFWGM 103


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 42/54 (77%), Positives = 47/54 (87%)
 Frame = +3

Query: 96  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEGSLADLK 257
           VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK RVFE SLADL+
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74



 Score = 33.1 bits (72), Expect = 0.052
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +2

Query: 272 ERSVRKFRLIAEYVQGRNVLCNFHGM 349
           + + RK RL AE VQGRNVL  F GM
Sbjct: 78  DNAYRKIRLRAEDVQGRNVLTQFWGM 103


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 227  SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 81
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


>At4g25240.1 68417.m03632 multi-copper oxidase type I family protein
           pollen-specific protein precursor -Nicotiana tabacum,
           PID:g19902; contains Pfam profile: PF00394 Multicopper
           oxidase
          Length = 589

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -2

Query: 285 RTDLSAPVSALDQPGTLRK 229
           +TD+S+P SA+ QP T+R+
Sbjct: 326 KTDVSSPWSAMSQPKTIRQ 344


>At3g29270.2 68416.m03675 expressed protein
          Length = 263

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 244 WLI*SGHWRGKVGPQIQINRRICARTECA 330
           W + S +  G +GP+  I R + A  EC+
Sbjct: 10  WNLASSYLTGNIGPKNDIRRPVHAHAECS 38


>At3g29270.1 68416.m03674 expressed protein
          Length = 263

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 244 WLI*SGHWRGKVGPQIQINRRICARTECA 330
           W + S +  G +GP+  I R + A  EC+
Sbjct: 10  WNLASSYLTGNIGPKNDIRRPVHAHAECS 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,536,830
Number of Sequences: 28952
Number of extensions: 144280
Number of successful extensions: 373
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)