Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10683
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 28 1.2
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 27 1.6
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 26 3.7
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 26 4.9
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 4.9
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 6.5
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 25 8.6
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 25 8.6
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.6
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 8.6
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 220 IWWYIRLARRWSICRIVERWVNWSLGWGIIWVSVWISRHFLF 95
+WW + +R + W+ S+ + +S +I RH LF
Sbjct: 683 LWWCLHQPKRMMDRSVKTFWIMSSISLTFLCISCFIMRHHLF 724
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 324 SWCWRDSWVRHCCRLLSE 271
SW W D ++ CCR LS+
Sbjct: 114 SWRWYDQYMLDCCRSLSD 131
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 26.2 bits (55), Expect = 3.7
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -1
Query: 151 SLGWGIIWVSVWISRH 104
++ W IIW+S+W +R+
Sbjct: 273 AIWWEIIWLSIWAARY 288
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 406 YHSSGLVSHKDSFDNQMHHVVSH 338
+ L+SHK+ F+ M H V H
Sbjct: 40 FQKKDLISHKNDFERTMRHDVLH 62
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +1
Query: 244 STFIQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSY 402
+T + P SL Q YP + P+P A + P G P + P Q +
Sbjct: 397 ATSLFPAMSLPPQAQFSPYPAVAPSPLALQTRGAPIGMEISIGSPALVPDQMH 449
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 475 GYEGHDGSPLWGSGLSSKE 531
GY H G PLWG L E
Sbjct: 358 GYVHHVGGPLWGGPLHDAE 376
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 445 SILSEKAVVAGYEGHDGSPLWGSGL 519
S+ S+ +V G+ H+ S LW SG+
Sbjct: 59 SVGSDASVSNGHNNHNESSLWTSGI 83
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = -2
Query: 609 FERHFLFLPT---EH-MQRNVSRITC-LGLDLL 526
F+RH + PT EH +R V C LGLDLL
Sbjct: 12 FKRHLILFPTPYEEHDCERTVLAFFCLLGLDLL 44
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 529 PWN*DLIPKGDYHRDLHNQPPLPSR*VSKHFEEL*EPIQLLYHSSGLVSHKDSFDN 362
P N D + R +PP P++ + E+ + + L ++GL SH S +N
Sbjct: 790 PLNRDELEVAALSRGSLPEPPKPNKQIVVQEEDQRDTLSLKTSTTGLSSHSKSAEN 845
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 194 EVEHLQDCRAMGKLVLGVG-DNLGFRMD 114
E+ HL+D +A+GK ++ G N+ R D
Sbjct: 155 EIHHLEDVKAVGKKLIKAGCKNVVIRCD 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,794
Number of Sequences: 5004
Number of extensions: 57819
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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