Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10683
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 33 0.24
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113... 31 0.72
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 1.7
01_01_0082 + 625198-625719 30 1.7
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 29 3.8
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 28 5.1
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349... 28 6.7
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926 28 6.7
05_04_0404 - 21000267-21001562 28 6.7
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162... 28 6.7
01_06_1498 + 37788855-37788996,37789086-37789303,37789380-377898... 28 6.7
12_02_0970 + 24939345-24939416,24940689-24941054 27 8.9
11_01_0170 - 1373986-1374013,1374061-1374326,1374693-1374926,137... 27 8.9
09_06_0081 + 20745627-20748144,20748211-20748308 27 8.9
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629... 27 8.9
06_01_1098 - 9017236-9018660 27 8.9
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 8.9
02_04_0166 - 20508656-20509092,20509282-20509372 27 8.9
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 313 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 435
P PT P + P A Y YPY P+Q W P+TP
Sbjct: 75 PPPTTP-AYSLPPPAQPYGQYPYPYPSQGQAGAAYWPPSTP 114
>03_03_0153 -
14910420-14910769,14910946-14911008,14911084-14911339,
14911432-14911522,14911798-14912096,14912177-14912295,
14922536-14922594,14922676-14922965,14923052-14923567,
14923634-14923936
Length = 781
Score = 31.1 bits (67), Expect = 0.72
Identities = 27/86 (31%), Positives = 36/86 (41%)
Frame = +1
Query: 277 QQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNASILS 456
Q+P ++ P PA PR PHG F P+ TP S ++ VP T Q
Sbjct: 621 QRPPVLTGP--RPAAHVPRPTPPPHGGF---RAPFSTPPSSARPSV--VPPTAQFWQYTG 673
Query: 457 EKAVVAGYEGHDGSPLWGSGLSSKEI 534
+ AG G PL +G SS +
Sbjct: 674 TSSQAAG-TSSQGPPLDHAGTSSDRL 698
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT-PTQSYDTTIEWVPTTP 435
PG P P P+P++ TP G GY P T P+ S DT+ PTTP
Sbjct: 143 PGGGCSSSPTPCDAP---PSPSSDTSPTTPGGGGGYSPTPSDTPPSPSSDTS----PTTP 195
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPY-VTPTQSYDTTIEWVPTTP 435
PG G P P P+P++ TP G GY P P+ S DT+ PTTP
Sbjct: 169 PGGGGGYSPTPSDTP---PSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTS----PTTP 221
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPY-VTPTQSYDTTIEWVPTTP 435
PG G P P P+P++ TP G GY P P+ S DT+ PTTP
Sbjct: 195 PGGGGGYTPTPSDAP---PSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTS----PTTP 247
>01_01_0082 + 625198-625719
Length = 173
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +1
Query: 259 PGYSLGQQPAAMSYPG-ITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 435
P Y P ++YP TP+ P P+G GY P PT Y+ T T P
Sbjct: 70 PVYYPPPSPPPVAYPPPTTPSTNCPP---PPYGGGGYNPTPSYNPTPGYNPTPSGWFTPP 126
Query: 436 QNASILS 456
S L+
Sbjct: 127 NMPSYLT 133
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 362 PNAPCGVTWPRGAVGAGVIPG*DIAAGCCPRLYPGWM 252
P A PR A + G D+ C RL+PGW+
Sbjct: 101 PTAAAAALLPRLRRAAAPLRGTDLWVPCWARLHPGWL 137
>12_02_0761 -
22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 286 AAMSYPGITPAPTAPRGHVTPHGA 357
+A S P TP P AP H+ PHG+
Sbjct: 41 SAPSPPHRTPEPVAPVWHLRPHGS 64
>07_03_1304 -
25629822-25629839,25630091-25631148,25631784-25634928,
25635454-25636293
Length = 1686
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 330 RCSWCWRDSWVRHCCRLLSETIPGLDEC 247
R +WCW++S R ETI L+ C
Sbjct: 770 RNTWCWQNSINAKTMRRCQETISDLENC 797
>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
Length = 306
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 262 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYD 405
GY G A Y G+ P P AP H G + PY Q Y+
Sbjct: 252 GYGGGAFQAPAGYYGVAPPPAAPYDH---QGWYYGNRQPYYHQQQCYE 296
>05_04_0404 - 21000267-21001562
Length = 431
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 217 WWYIRLARRWSICRIVERWVNWSLGWGI 134
WWY+ L ++ V +V ++GWG+
Sbjct: 88 WWYLGLCASATVTAAVMSYVQDNVGWGL 115
>03_02_0671 +
10315260-10315370,10315984-10316027,10316141-10316204,
10316278-10316392,10316504-10316571,10316917-10317014,
10317543-10317657,10318425-10318641,10319541-10319667,
10319803-10319857,10319997-10320093,10320748-10320876,
10320964-10321097,10321660-10321746,10321998-10322069,
10322320-10322359,10322535-10322779,10323587-10323764,
10323931-10324136,10324681-10324977
Length = 832
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 408 CIIAL--GWCHIRIALITKCTMWCHMAARCSWCWRDS 304
C+ AL G CHIR + +W WCW +S
Sbjct: 401 CLHALWFGNCHIRAIAV----LWIDFVREIRWCWEES 433
>01_06_1498 +
37788855-37788996,37789086-37789303,37789380-37789819,
37789916-37790762
Length = 548
Score = 27.9 bits (59), Expect = 6.7
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -1
Query: 217 WWYIRLARRWSICRIVERWVNWSLGWGI 134
WWY + ++ +V +V ++GWG+
Sbjct: 185 WWYFGMCAGTAVTTMVSSYVQDNVGWGL 212
>12_02_0970 + 24939345-24939416,24940689-24941054
Length = 145
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 412 IEWVPTTPQNASILSEKAVVAGYEGHDGSPLWG 510
+ W+P + ++ S +EKA G EG +GS G
Sbjct: 97 VSWIPASGRSGSGSAEKASGGGEEGVEGSGYGG 129
>11_01_0170 -
1373986-1374013,1374061-1374326,1374693-1374926,
1375034-1375171,1375255-1375557,1376008-1376172,
1376469-1376933
Length = 532
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 484 GHDGSPLWGSGLSSKEI*SQASYA*NISLHMFRGEEKKMPFKT 612
G D SP WG+G + + + + L +RG+EK+ +T
Sbjct: 120 GADSSPSWGNGDGGGGRRASRAPSVAVDLQPYRGDEKRREIET 162
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +1
Query: 283 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 435
P + P TP P APRG P G S+ Y + SY + PT P
Sbjct: 644 PHLRAPPVATPPPAAPRGWTMP-TTIGRYSFSYGGVSLSY--AMPCAPTAP 691
>09_04_0518 -
18261420-18261953,18262054-18262626,18262736-18262948,
18263379-18263510,18263591-18263731,18263899-18264120
Length = 604
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 93 GKFTTKISKHSKYLFDHG 40
G FT +SKH+ +LF HG
Sbjct: 367 GNFTIFLSKHNTFLFGHG 384
>06_01_1098 - 9017236-9018660
Length = 474
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 253 IQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPY--VTPTQSYDTTIEWVP 426
+QPG + A S+PG + + P H F + Y Y + P + ++ + +
Sbjct: 335 LQPGAPRAPRTAPSSHPGASSSSAPPPPHGYDPNVFFHPQYAYFGMQPNEYFNPVLGAIN 394
Query: 427 TTPQNASILS 456
T ++ LS
Sbjct: 395 TLSESIQRLS 404
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/46 (43%), Positives = 22/46 (47%)
Frame = +1
Query: 253 IQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTP 390
I P +LG A G +APR VTP GA G S P VTP
Sbjct: 800 IAPSLALGNSKCA----GAEGLNSAPR--VTPPGAEGLNSAPRVTP 839
>02_04_0166 - 20508656-20509092,20509282-20509372
Length = 175
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 274 GQQPAAMSYPGITPAPTAPRGHVT 345
G AA+S+P P APRG VT
Sbjct: 74 GYDAAALSFPEEASRPRAPRGRVT 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,013,867
Number of Sequences: 37544
Number of extensions: 416458
Number of successful extensions: 1166
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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