Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10683
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 31 0.74
SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06) 30 1.7
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_40430| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-19) 29 3.0
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 29 3.9
SB_16518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_31553| Best HMM Match : RCSD (HMM E-Value=2.7) 28 5.2
SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08) 28 6.9
SB_49922| Best HMM Match : PAN (HMM E-Value=2.1) 28 6.9
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_32746| Best HMM Match : Lentiviral_Tat (HMM E-Value=6.8) 28 6.9
SB_29793| Best HMM Match : Trigger_N (HMM E-Value=3.3) 28 6.9
SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09) 28 6.9
SB_4707| Best HMM Match : Toxin_17 (HMM E-Value=8.2) 28 6.9
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 27 9.1
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 27 9.1
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +1
Query: 262 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQN 441
G++ +SYPG PA A G P G +YP P Q T+ +P P
Sbjct: 34 GFNPPPSSVPVSYPGPPPAMYAVPGMPMPPAYPGMPTYP-PQPMQFLPGTLPGMPPPPMF 92
Query: 442 ASILSEKAV 468
A +++ +A+
Sbjct: 93 AQMMAPQAM 101
>SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06)
Length = 88
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 298 YPGIT--PAPTAPRGHVTPHGAFGYQSYP 378
YPGI P P RG + P G GYQ P
Sbjct: 2 YPGIEGPPGPKGDRGPIGPRGPQGYQGAP 30
>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 253 IQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT--PTQSYDTTIEWVP 426
+ G ++ PA + P + PT P G P G S P V PT T+ P
Sbjct: 463 VPAGPTVPSGPAVPTGPTVPSGPTVPSGPTVPSGP-TVPSGPTVPSGPTVPSGPTVPSGP 521
Query: 427 TTPQNASIL 453
T P ++++L
Sbjct: 522 TVPSDSTVL 530
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +1
Query: 283 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT--PTQSYDTTIEWVPTTPQNASILS 456
P S P + PT P G P G S P V PT T+ PT P ++ S
Sbjct: 455 PTVPSDPTVPAGPTVPSGPAVPTGP-TVPSGPTVPSGPTVPSGPTVPSGPTVPSGPTVPS 513
Query: 457 EKAVVAG 477
V +G
Sbjct: 514 GPTVPSG 520
>SB_40430| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-19)
Length = 253
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 465 CLLAKYRSILRSCRNPFNCCIIALGWC 385
CL + R RSC P+NC +I C
Sbjct: 36 CLRVEIRGCERSCTTPYNCALILTTAC 62
>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 283 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT-PTQSYDTTIEWVPTTPQ 438
PAA + PG P + + H + YQS + P +Y ++ +W+P PQ
Sbjct: 473 PAANTAPGYVLPPVSTLTN-KGHDSTQYQSAQFAQIPPGAYPSSDQWIPAYPQ 524
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Frame = +1
Query: 295 SYPGITPAPT-APRGHVTPHGAF----GYQSYPYVTPTQSYDTTIEWVPTT 432
S P TP + P TP ++ Y P TPT SY T + PTT
Sbjct: 16 STPSYTPTTSYTPTPSYTPTTSYTCTTSYTPTPSYTPTPSYTPTTSYTPTT 66
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +1
Query: 241 CSTFIQPGYSLGQQPAAMSYPGITPAPT-APRGHVTPHGAFGYQSYPYVTPTQSYDTTIE 417
C+T P S P+ TP + P TP + Y TPT SY +T
Sbjct: 40 CTTSYTPTPSYTPTPSYTPTTSYTPTTSYTPTTSYTPTPS--YTPTTSYTPTPSYTSTTS 97
Query: 418 WVPTT 432
+ PTT
Sbjct: 98 YTPTT 102
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 364 YQSYPYVTPTQSYDTTIEWVPTT 432
Y S P TPT SY T + PTT
Sbjct: 14 YTSTPSYTPTTSYTPTPSYTPTT 36
>SB_16518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 204 LMYHQIILCLVIMFNIHPTRV*SRTTTCSNVLPRNHASTNCTSRPCDTTWCIWL 365
L Y+Q LC +++ R+ S TC+ V P N T+ + +WC WL
Sbjct: 197 LAYNQSKLCSIMLSMELNRRLSSEGVTCNAVHPGNLIYTSLYGK----SWCYWL 246
>SB_31553| Best HMM Match : RCSD (HMM E-Value=2.7)
Length = 139
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 508 PKGDYHRDLHNQPPLPSR*V-SKHFE 434
PKGD D+ + PP S+ + SKHFE
Sbjct: 101 PKGDQSTDIPDYPPTKSQRIPSKHFE 126
>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +1
Query: 244 STFIQPGYS-LGQQP---AAMSYPGITPAPTAPRGHVTPHGAFGYQSYP 378
S+ +QP + + Q P A YPG++P P + G TP + S P
Sbjct: 12 SSMLQPSTNEMPQTPMSTAGAPYPGMSPTPVSSYGQATPPPQLQHPSGP 60
>SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08)
Length = 281
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 394 QSYDTTIEWVPTTPQNASILSEKAVVAGYEGHDGSPLW 507
Q +D I + + PQN ++ S ++V Y+ H PLW
Sbjct: 87 QLFDAAISAI-SHPQNMALCSVDSMVLKYKKHGFEPLW 123
>SB_49922| Best HMM Match : PAN (HMM E-Value=2.1)
Length = 219
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -2
Query: 390 WCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIP 262
W H + +C CH A RC W S V C ++S P
Sbjct: 165 WFHENVTSSKECAWLCHQATRC-MAW--SLVEDRCVMMSNMPP 204
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = +1
Query: 259 PGYSLGQQPAAMSYPGITPAPT-APRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 435
P S QP P TPAPT A TP P PTQ+ PT
Sbjct: 708 PTLSTAAQPTQAQNPAPTPAPTQAQNPAPTPAPTQAQNPAPTPAPTQAQPPVPSPAPTQA 767
Query: 436 Q 438
Q
Sbjct: 768 Q 768
>SB_32746| Best HMM Match : Lentiviral_Tat (HMM E-Value=6.8)
Length = 171
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +1
Query: 136 SPTPRTNLPIALQSCKCSTSWPA*CTTKLSCAW 234
SP+P + C W CT LSCAW
Sbjct: 126 SPSPYIRSACGGRVCNWIVKWVFSCTPDLSCAW 158
>SB_29793| Best HMM Match : Trigger_N (HMM E-Value=3.3)
Length = 533
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 283 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNAS 447
P+ G PAP++P+G V+ Q P + T+ WV P AS
Sbjct: 124 PSKAHAEGEAPAPSSPQGEVS--DKLDPQRTPRTPLGLKAERTVHWVTLNPSTAS 176
>SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09)
Length = 305
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 394 QSYDTTIEWVPTTPQNASILSEKAVVAGYEGHDGSPLW 507
Q +D I + + PQN ++ S ++V Y+ H PLW
Sbjct: 87 QLFDAAISAI-SHPQNMALCSVDSMVLKYKKHGFEPLW 123
>SB_4707| Best HMM Match : Toxin_17 (HMM E-Value=8.2)
Length = 121
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 338 WPRGAVGAG-VIPG*DIAAGCCPRLYPGWMN 249
W R + AG ++ ++ G C YPGWMN
Sbjct: 35 WYRISENAGSIVTNRCVSRGSCGSKYPGWMN 65
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 310 TPAPTAPRGHV-TPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 435
TP PT P TP + + P TPT + T PTTP
Sbjct: 73 TPTPTTPTPKTPTPTTSTLTKPTPATTPTPTKPTPTAHTPTTP 115
>SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 247 TFIQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPT 393
TF+ P Y P ++ P ++P+ AP P+ A + + PYV PT
Sbjct: 231 TFVAPPYVT---PPYVTPPYVSPSYVAPPYVAPPYVAPTFVAPPYVAPT 276
>SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 745
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 105 CLDIHTETQIIPHPKDQFTHRSTILQMLHLLASLMYHQIIL 227
CLD +T TQI+P H +T++Q+L S ++ ++
Sbjct: 494 CLDRNTVTQILPKAV-SCLHPNTVIQILPKAVSCLHRNTVI 533
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 253 IQPGYSLGQ-QPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPY-VTPTQSYDTTIEWVP 426
I+P LG +P +P+ G P+ + QS PY + PTQ+ TI+ +P
Sbjct: 104 IRPSDGLGVFDDICQGHPNNSPSGGPMAGQCAPYRLYPTQSAPYRLYPTQTV-RTIQTLP 162
Query: 427 TTPQNASIL 453
T + L
Sbjct: 163 NTVRTIQTL 171
>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1577
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 285 CSNVLPRNHASTNCTSRPCDTTWCIWLSKLSLCD 386
C L +NH S C S+ + C LS+C+
Sbjct: 358 CFRCLRKNHRSYECKSKDSNCKGCAGAHHLSICE 391
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,618,665
Number of Sequences: 59808
Number of extensions: 472296
Number of successful extensions: 1322
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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