Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10683
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z83236-1|CAB05777.1|  445|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   6.0  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   6.0  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   6.0  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 313 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNASILSEKA 465
           P PT P   + P  +   +S P  +PT    T     P TPQN ++ S  A
Sbjct: 621 PPPTRPASVIAPSSSVVPKSQPRPSPTTRPPTRATIRP-TPQNKAVTSRPA 670


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical
           protein C16B8.3 protein.
          Length = 164

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 22/80 (27%), Positives = 25/80 (31%)
 Frame = +1

Query: 262 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQN 441
           G  +G  P      G T AP  P G        GY       PTQ Y    +  P  PQ 
Sbjct: 45  GAGVGYAPPPPRPYGATYAPPPPMGIGAGVNPSGYVQQAPPLPTQGYSAYNQQPPPLPQQ 104

Query: 442 ASILSEKAVVAGYEGHDGSP 501
               +      GY    G P
Sbjct: 105 PYQTNMYPSNPGYSSTPGYP 124


>Z83236-1|CAB05777.1|  445|Caenorhabditis elegans Hypothetical
           protein K10H10.1 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 310 TPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPT 429
           +P P+ P G +  H AF   +    T   SY     W+P+
Sbjct: 241 SPCPSVPWGTLFRHPAFWAAAVAQYTGGNSYSILFNWLPS 280


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
 Frame = +1

Query: 319  PTAPRGHVTPHGAFGYQSYPYVTPT-QSYDTTIEWVPTTP---QNASILSEKAVVAGYEG 486
            P  P G V P    G   YP VTP  Q   T +   P  P    + S L   A  A   G
Sbjct: 5730 PVGPDGQVLPTDESGNYIYPDVTPDGQVQPTDVSGKPVYPVRGPDGSTLPTDASGAAL-G 5788

Query: 487  HDGSPL 504
             DG P+
Sbjct: 5789 PDGKPI 5794


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
 Frame = +1

Query: 319  PTAPRGHVTPHGAFGYQSYPYVTPT-QSYDTTIEWVPTTP---QNASILSEKAVVAGYEG 486
            P  P G V P    G   YP VTP  Q   T +   P  P    + S L   A  A   G
Sbjct: 5775 PVGPDGQVLPTDESGNYIYPDVTPDGQVQPTDVSGKPVYPVRGPDGSTLPTDASGAAL-G 5833

Query: 487  HDGSPL 504
             DG P+
Sbjct: 5834 PDGKPI 5839


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
 Frame = +1

Query: 319  PTAPRGHVTPHGAFGYQSYPYVTPT-QSYDTTIEWVPTTP---QNASILSEKAVVAGYEG 486
            P  P G V P    G   YP VTP  Q   T +   P  P    + S L   A  A   G
Sbjct: 5775 PVGPDGQVLPTDESGNYIYPDVTPDGQVQPTDVSGKPVYPVRGPDGSTLPTDASGAAL-G 5833

Query: 487  HDGSPL 504
             DG P+
Sbjct: 5834 PDGKPI 5839


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 262 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGY 366
           GY  G   A  +YPG    P AP   + P G  G+
Sbjct: 199 GYPGGPSSAPSAYPGAPQVPQAPNSFIPP-GTGGF 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,000,167
Number of Sequences: 27780
Number of extensions: 344211
Number of successful extensions: 1145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)