Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10683
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.25 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 256 QPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGA 357
           QPG    QQ  A  + G+  +P + +    P GA
Sbjct: 218 QPGMHPRQQQQAQQHQGVVTSPLSQQQQAAPQGA 251


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 358 FGYQSYPYVTPTQSYDTTIEWVPTTPQNASILSEKAVVAGY 480
           F Y  Y Y   TQ+ ++ I  +PT      I+    + AGY
Sbjct: 27  FDYYFYDYSNRTQALESIIANIPTWLSFIRIVLVILLRAGY 67


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 191 VEHLQDCRAMGKLVLGVGDNLGFRMDI 111
           + ++Q  R +     GVG N+G+++ I
Sbjct: 135 INNVQGLRGLKSCHTGVGRNVGYKIPI 161


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 191 VEHLQDCRAMGKLVLGVGDNLGFRMDI 111
           + ++Q  R +     GVG N+G+++ I
Sbjct: 135 INNVQGLRGLKSCHTGVGRNVGYKIPI 161


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 191 VEHLQDCRAMGKLVLGVGDNLGFRMDI 111
           + ++Q  R +     GVG N+G+++ I
Sbjct: 135 INNVQGLRGLKSCHTGVGRNVGYKIPI 161


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 250 MLNIITRHRIIWWY 209
           +L  +T HR  WW+
Sbjct: 18  ILIFVTSHRPAWWF 31



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 409 TIEWVPTTPQNASILSEKAVVAGYEGHDGSPL----WGSGLSSKEI*SQASY 552
           ++  +PTT   A IL E   ++GY    G+ +    W +GL+ +       Y
Sbjct: 388 SLRLIPTTTCIARILDEPIELSGYRLTAGTVVLLHTWIAGLNEENFKDAKKY 439


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 385 TPTQSYDTTIEWVPTTPQNAS 447
           T T +  TT    P T QNAS
Sbjct: 665 TTTTTTTTTTTTTPNTTQNAS 685


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,471
Number of Sequences: 438
Number of extensions: 4159
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)