Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10683
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family... 33 0.15
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 32 0.26
At2g28580.1 68415.m03472 hypothetical protein contains Pfam prof... 31 0.46
At4g19420.1 68417.m02857 pectinacetylesterase family protein con... 31 0.80
At4g31090.1 68417.m04413 expressed protein 30 1.1
At1g74350.1 68414.m08613 intron maturase, type II family protein... 29 2.4
At3g12060.1 68416.m01500 expressed protein similar to hypothetic... 28 5.6
At1g30780.1 68414.m03763 F-box family protein 28 5.6
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 27 7.4
At1g66060.1 68414.m07498 hypothetical protein contains Pfam PF04... 27 7.4
At1g22570.1 68414.m02818 proton-dependent oligopeptide transport... 27 7.4
At5g13140.1 68418.m01505 expressed protein 27 9.8
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 27 9.8
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 9.8
At1g34040.1 68414.m04220 alliinase family protein contains Pfam ... 27 9.8
>At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family
protein Contains similarity to pre-mRNA processing
protein PRP39 gb L29224 from S. cerevisiae. ESTs
gb|R64908 and gb|T88158, gb|N38703 and gb|AA651043 come
from this gene
Length = 768
Score = 33.1 bits (72), Expect = 0.15
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 259 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT-PTQSYDTTIEWVPTTP 435
P Y GQQ A +Y G TAP+ A Y +YP T PTQSY + P
Sbjct: 691 PAY--GQQAAYGAYGGYPAGYTAPQAPTPVPQAAAYGAYPAQTYPTQSYAPPV--AAAAP 746
Query: 436 QNASILSEKAVVA 474
A + A VA
Sbjct: 747 AAAPVQQPAAAVA 759
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 32.3 bits (70), Expect = 0.26
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +1
Query: 322 TAPRGHVTPHGAFGYQSYPY---VTPTQSYDTTIEWVPTTPQNASILSEKAVVAGYEGHD 492
T P VT GA Y S P P+Q+ T + + TT +N + + V G D
Sbjct: 151 TNPTSGVTM-GASTYSSIPSEASAAPSQTLLTKVSSISTTDENKASVVRSHEVPGKSSTD 209
Query: 493 GSPLWGSGLSSKEI 534
G PL +G SS +
Sbjct: 210 GRPLSTAGKSSANL 223
>At2g28580.1 68415.m03472 hypothetical protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 468
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 373 YPYVTPTQSYDTTIEWVPTTPQNASILSEKAVVAGYEGHDGS 498
YP T Y + ++++ T Q+ +L++K +V + GH GS
Sbjct: 333 YPRTTFVCDYISFLDFLINTDQDVDLLAKKGIVKNWLGHQGS 374
>At4g19420.1 68417.m02857 pectinacetylesterase family protein
contains Pfam profile: PF03283 pectinacetylesterase
Length = 397
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 441 ILRSCRNPFNCCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDS 304
+++ R F +I LG R I C C + SW W+DS
Sbjct: 304 VMQDFRLEFLSAVIGLGRSSSRGMFIDSCYTHCQTETQTSWFWQDS 349
>At4g31090.1 68417.m04413 expressed protein
Length = 250
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 346 PHGAFGYQSYPYVTPTQSYDTTIEWVP-TTPQNASILSEKAVVAGYEGHDGS 498
PHG+ G S + + T E P TT QN +L E GY HDGS
Sbjct: 87 PHGS-GSTSTHHSDDESHHSGTSERFPGTTEQNQQMLVEHYSPQGYAAHDGS 137
>At1g74350.1 68414.m08613 intron maturase, type II family protein
similar to maturase [Arabidopsis thaliana] GI:6851020;
contains Pfam profile: PF01348 Type II intron maturase
Length = 753
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 283 VVVRDYTRVG*MLNIITRHRIIWWYIRLARRWSI 182
+ + Y R ML ++ +II WY L RRW I
Sbjct: 550 ITAKGYARSNSMLILLDTAQIIDWYSGLVRRWVI 583
>At3g12060.1 68416.m01500 expressed protein similar to hypothetical
protein GB:CAB82953 GI:7340710 from [Arabidopsis
thaliana]
Length = 556
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 609 FERHFLFLPTEHMQRNVSRITCLGLDLLGTET*SPKGTTIVTFITSH 469
F FL E ++N ++ L LDL+G + KG I+ F T H
Sbjct: 323 FASPFLVQEWEVTEKNGTKKETLRLDLVGKSSEQYKGADILVFNTGH 369
>At1g30780.1 68414.m03763 F-box family protein
Length = 482
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 313 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 435
P P P P F QS PY +D + W+P+TP
Sbjct: 105 PVPVWPSLPEYPPFPFVDQSAPYQGFAPRFDESANWMPSTP 145
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Frame = +2
Query: 458 RRQWWLVMKVTMVVPF----------GDQVSVPRRSNPRQVMRETFLCI 574
R WW ++ +VV F G++V V R SNP ++ +E +C+
Sbjct: 340 RALWWSALEPFVVVVFISKQVGSLRKGNKVEVARNSNPDKLKKEDTICL 388
>At1g66060.1 68414.m07498 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577); common family
comprised of At4g09440, At1g66000, At1g66060
Length = 315
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +1
Query: 316 APTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNASILSEKAVVAGYEG 486
+P P AF + P+V PT + + P P++ I + VA Y G
Sbjct: 6 SPKQPTSQDFTKAAFKLLANPHVEPTVEFIAALTKPPENPEDKDIKFFRFCVANYPG 62
>At1g22570.1 68414.m02818 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 565
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = -1
Query: 217 WWYIRLARRWSICRIVERW----VNWSLGWGI 134
WW++ L+ SI IV + VNW+ G+GI
Sbjct: 192 WWFLSLSAGISISIIVVAYVQENVNWAFGFGI 223
>At5g13140.1 68418.m01505 expressed protein
Length = 267
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/47 (23%), Positives = 19/47 (40%)
Frame = +1
Query: 298 YPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQ 438
YP + P PT P P + + + P + + W+P P+
Sbjct: 213 YPDLPPLPTLPPFPSFPFPSLPFGNPNLALPAFDWKNPVTWIPYLPR 259
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 244 STFIQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSY 375
S + PGY G + PG P +P G+ + +GY Y
Sbjct: 306 SGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGY--SNQGYGYGGY 347
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 283 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTP 390
P+ S P +TP P P TP G S PYV P
Sbjct: 220 PSVPSPPDVTPTPPTPPSVPTPSG-----SPPYVPP 250
>At1g34040.1 68414.m04220 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 457
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 400 YDTTIEWVPTTPQNASILSEKAVVAGYEGHDGSPLWGSGL 519
Y+ T W PT A++ +E A GH S + G G+
Sbjct: 24 YNNTSTWSPTWTNRAALEAEAAASVSCSGHGRSYVDGLGV 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,162
Number of Sequences: 28952
Number of extensions: 318033
Number of successful extensions: 879
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -