Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10682
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   5.6  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   5.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   7.4  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   9.8  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 337 IESHIIIPHKLENYSCEVYCIATQTCH 417
           + SH+     +  YSC     AT+ CH
Sbjct: 274 LNSHMKSHSNVYRYSCRDCSYATKYCH 300


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 337 IESHIIIPHKLENYSCEVYCIATQTCH 417
           + SH+     +  YSC     AT+ CH
Sbjct: 32  LNSHMKSHSNVYRYSCRDCSYATKYCH 58


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +3

Query: 540 GKLFSFHTRNWTPI-----RLGTKNVWN*FYDFRIE 632
           G++ S +  ++ PI     +L  K +W+ F+D + E
Sbjct: 3   GQMVSVYNNDFYPIEKTKAQLANKELWDQFHDLQTE 38


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/28 (25%), Positives = 19/28 (67%)
 Frame = +2

Query: 344 LILSYLINLKIIVVKFTVSLPKPVTGVS 427
           ++++Y++NL  + + + +S  + + GVS
Sbjct: 250 VVITYVLNLTDLFLVYGMSKSRNIEGVS 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,021
Number of Sequences: 336
Number of extensions: 3187
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)