Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10682
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.6  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    26   6.0  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   6.0  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 660  FNSSSNRLLIQF*SHKINSTHSLCPNVWASNF 565
            F ++SN +  +F S+  NST SL P V  +NF
Sbjct: 3885 FRNTSNTMTSRFVSNDFNSTISLQPVVQFNNF 3916


>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 115 ASSSSPQTPTLI--TLLPKISEYAFAFLNSKNSDA 17
           A  +   TPT++  T++PK  +YAF  L+S   +A
Sbjct: 139 APGAYQNTPTIVHWTVIPKFYQYAFDLLDSALREA 173


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 377 IVVKFTVSLPKPVTGVSAADVLNGHSILNELYPGDTGD 490
           +V K +  +P  +   +    L  ++++ E YP  TGD
Sbjct: 105 LVSKVSEKIPLKIASAALLQGLTAYTLIEEAYPVKTGD 142


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 414 TGLGSDTVNFTTIIFKFMRYDNMRFNAVPSSALTETCTF 298
           T LG+ T N    IFK+ + ++++   VP   L   C F
Sbjct: 611 TTLGAFTGNLGYPIFKYFQNNSLQHLLVPVLGLASICVF 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,959
Number of Sequences: 5004
Number of extensions: 49524
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)