Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10682
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 32 0.39
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154... 30 1.6
02_01_0539 + 3941189-3941896,3942110-3942394,3942508-3943394,394... 29 2.7
04_01_0546 + 7091058-7091508,7092221-7092542,7092783-7092822 29 3.6
04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031 29 4.8
08_02_0621 - 19397038-19397076,19397305-19397593,19397676-193978... 28 6.3
12_02_0221 - 15855479-15855517,15855745-15856033,15856118-158562... 28 8.3
12_01_0810 + 7429834-7429960,7430534-7430696,7430796-7430844,743... 28 8.3
10_01_0331 + 3620080-3620285,3620364-3620534,3620617-3620752 28 8.3
07_03_0677 + 20620873-20621401,20621555-20621580,20621659-206221... 28 8.3
06_03_0098 - 16621473-16621511,16621617-16621655,16621741-166220... 28 8.3
06_01_0379 - 2723365-2723490,2724558-2724647,2724813-2725046,272... 28 8.3
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 675 EIRTRFNSSSNRLLIQF*SHKINSTHSLCPNVWASNFWYEMRKAFR 538
++R +N + L+ H+ N+ H C N W S W ++ K FR
Sbjct: 172 QLRASWNPGLEKALVDL-LHEHNNRHYRCQNGWTSEAWNKVVKEFR 216
>02_05_0863 +
32313890-32314132,32314227-32314517,32315157-32315493,
32315944-32316278,32316763-32317010,32317296-32317881,
32317970-32318083,32318165-32318287,32318325-32318531
Length = 827
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 553 HFIPEIGRPYVWAQRMCGIDFM 618
+F + RPY WAQ + GIDF+
Sbjct: 413 NFSEKDSRPYKWAQHLAGIDFL 434
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 371 KIIVVKFTVSLPKPVTGVSAADVLN-GHSILNELYPGDTGDDSPHPALLIY 520
K++V++F V V D H IL L+P DTG + PH +Y
Sbjct: 357 KLMVLRFDYLAKLNVVCVGIEDSKGLDHDILCNLFPDDTGLELPHQMAKLY 407
>02_01_0539 +
3941189-3941896,3942110-3942394,3942508-3943394,
3943473-3943643,3943726-3943744,3943763-3944014,
3944100-3944138,3944244-3944282
Length = 799
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +3
Query: 507 HFLFTKKCRYIGKLFSFHTRNWTPIRLGTKNVW 605
H++ C Y+ + +WTPI+L W
Sbjct: 686 HWILLSTCHYLNSRIDKNAYDWTPIQLAIDEAW 718
>04_01_0546 + 7091058-7091508,7092221-7092542,7092783-7092822
Length = 270
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 571 GRPYVWAQRMCGIDFMTSELNEQSVRRA--VEPCPNLSV 681
G+P++W R C ++ EL ++ R V CP L V
Sbjct: 106 GKPFLWVVRSCNEHKLSEELRDKCKERGLIVSWCPQLEV 144
>04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031
Length = 488
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 571 GRPYVWAQRMCGIDFMTSELNEQSVRRA--VEPCPNLSV 681
G+P++W R C ++ EL ++ R V CP L V
Sbjct: 332 GKPFLWVVRSCDEHKLSEELRDKCKERGLIVSWCPQLEV 370
>08_02_0621 -
19397038-19397076,19397305-19397593,19397676-19397824,
19399030-19399839,19399926-19400105,19400450-19400674,
19400750-19401157
Length = 699
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 528 CRYIGKLFSFHTRNWTPIRLGTKNVW 605
C Y+ + +WTPI+LG W
Sbjct: 606 CHYLNSRIDKNAYDWTPIQLGIDEAW 631
>12_02_0221 -
15855479-15855517,15855745-15856033,15856118-15856288,
15856367-15856572
Length = 234
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +3
Query: 528 CRYIGKLFSFHTRNWTPIRLGTKNVW 605
C Y+ + NWTPI+L W
Sbjct: 141 CHYLNSRIDKNAYNWTPIQLAIDEAW 166
>12_01_0810 +
7429834-7429960,7430534-7430696,7430796-7430844,
7431203-7431385,7431824-7431898,7431963-7432148,
7432362-7432450,7432892-7433444
Length = 474
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 337 IESHIIIPHKLENYSCEVYC 396
+++ +I+P ENY CEV C
Sbjct: 87 LDTSVIVPWLRENYGCEVVC 106
>10_01_0331 + 3620080-3620285,3620364-3620534,3620617-3620752
Length = 170
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 495 HPTLHFLFTK--KCRYIGKLFSFHTRNWTPIRLGTKNVW 605
H L F+ K C Y+ + +WTPI+L VW
Sbjct: 128 HLILLFITPKWSTCHYLNSRIDKNAYDWTPIQLAIDEVW 166
>07_03_0677 +
20620873-20621401,20621555-20621580,20621659-20622105,
20622193-20623079,20623158-20623328,20623411-20623603,
20623785-20623823,20623929-20623967
Length = 776
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +3
Query: 528 CRYIGKLFSFHTRNWTPIRLGTKNVW 605
C Y+ + NWTPI+L W
Sbjct: 702 CHYLNSRIDKNAYNWTPIQLAIDEAW 727
>06_03_0098 -
16621473-16621511,16621617-16621655,16621741-16622029,
16622112-16622282,16622361-16623244,16623332-16623775,
16623854-16624561
Length = 857
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 528 CRYIGKLFSFHTRNWTPIRLGTKNVW 605
C Y+ +T +WTPI+L W
Sbjct: 751 CHYLNSRIDKNTYDWTPIQLAIDEAW 776
>06_01_0379 -
2723365-2723490,2724558-2724647,2724813-2725046,
2725174-2725470
Length = 248
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 648 SNRLLIQF*SHKINSTHSLCPNVWASN---FWYEMRKAFRYTCI 526
S R LI + + N HS+CP W+++ F+ M +TCI
Sbjct: 165 SKRHLIWYGFERKNGVHSVCPAYWSAHRRWFFMSMICLNPFTCI 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,545
Number of Sequences: 37544
Number of extensions: 292756
Number of successful extensions: 748
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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