Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10682
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31746| Best HMM Match : HR1 (HMM E-Value=2.1)                       45   5e-05
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 28   6.4  
SB_17497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_31746| Best HMM Match : HR1 (HMM E-Value=2.1)
          Length = 398

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
 Frame = +1

Query: 496 TPPCTS-YLLKNAGISESFSHFIPEIGRPYVWAQRMCGIDFMTSELNE 636
           +P  T+ + L   GI +SFS F+ E G+P++WAQR+CG++F+    NE
Sbjct: 227 SPNATNQFQLTKDGI-DSFSAFVGETGQPFLWAQRICGLEFLPDCQNE 273


>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/119 (19%), Positives = 45/119 (37%)
 Frame = +1

Query: 334 CIESHIIIPHKLENYSCEVYCIATQTCHWCICC*CSKWTFYFK*TVPRGYGR*FTPPCTS 513
           C+  ++   H +      V  +    C  C  C C  +  ++  +V   Y    +P CT 
Sbjct: 129 CLCRYVTSVHHVYVVMSPVCTMFRSLCRQCAPCLCRYFASHYVASVHHVYVV-MSPVCTM 187

Query: 514 YLLKNAGISESFSHFIPEIGRPYVWAQRMCGIDFMTSELNEQSVRRAVEPCPNLSVATV 690
           ++      +    H++  +   YV    +C +  +      +S+ R   PC    VA+V
Sbjct: 188 FMSSCRQCAPCLGHYVASVHHVYVVILPVCTMFMLPVCTMFRSLCRQCAPCLCRYVASV 246


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 266 KIKRVFKKHPLNVQVSVKAEDGTALNLI 349
           KI +V K H L +  SV +E+G  +NL+
Sbjct: 208 KIYKVLKYHHLKINQSVPSEEGKVVNLL 235


>SB_17497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 404 PKPVTGVSAADVLNGHSILNELYPGDTGDDSPHPA 508
           P P +  +   +   HS +N+ YP D GDD  + A
Sbjct: 3   PWPASKTTQTPLKAVHSDMNDHYPNDYGDDDDYKA 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,370,332
Number of Sequences: 59808
Number of extensions: 354577
Number of successful extensions: 808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)