Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10682
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical ...    37   0.012
Z49969-3|CAA90267.1|  792|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL032630-2|CAA21559.1|  217|Caenorhabditis elegans Hypothetical ...    28   5.7  

>AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical
           protein Y32H12A.2 protein.
          Length = 610

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 20/103 (19%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
 Frame = +2

Query: 206 NQKETTSQN*KRI*RRQAEAKIKRVFKK----HPLNVQVSVKAEDGTALNLILSYLINLK 373
           ++ ET +   KR      + KI ++  +    HP++++  ++  +   +++ + YL  LK
Sbjct: 312 SKDETEAMKRKRKEDETTQEKINKMASELLEVHPMSLEFEIECSENIKISMQIQYLTELK 371

Query: 374 IIVVKFTVSLPKPVTGVSAADVLNGHSILNELYPGDTGDDSPH 502
           +   K+ ++     + +  +   +  S++++L+  DTGD  P+
Sbjct: 372 VTTAKWHINTD---SKLKKSPFFSIDSLMSDLFENDTGDKCPN 411


>Z49969-3|CAA90267.1|  792|Caenorhabditis elegans Hypothetical
           protein W01C9.3 protein.
          Length = 792

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 202 NKPKRNDITELKTYLKKTS 258
           NKPKRN + ELK + KK S
Sbjct: 169 NKPKRNRLQELKNFCKKPS 187


>AL032630-2|CAA21559.1|  217|Caenorhabditis elegans Hypothetical
           protein Y62H9A.2 protein.
          Length = 217

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 656 TALLTDCSFNSEVIKSIPHILC 591
           TAL  +C    E +KS+ HILC
Sbjct: 62  TALRAECELTIERVKSLDHILC 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,903,413
Number of Sequences: 27780
Number of extensions: 281959
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)