Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10682
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34400.1 68415.m04215 pentatricopeptide (PPR) repeat-containi...    29   2.3  
At3g07780.1 68416.m00949 expressed protein                             29   4.0  
At5g42920.2 68418.m05233 expressed protein                             28   5.2  
At5g42920.1 68418.m05232 expressed protein                             28   5.2  
At4g24830.1 68417.m03557 arginosuccinate synthase family contain...    28   6.9  
At3g16060.1 68416.m02030 kinesin motor family protein similar to...    28   6.9  
At5g48160.1 68418.m05949 tropomyosin-related contains weak simil...    27   9.2  
At3g58340.1 68416.m06503 meprin and TRAF homology domain-contain...    27   9.2  
At1g26410.1 68414.m03221 FAD-binding domain-containing protein s...    27   9.2  

>At2g34400.1 68415.m04215 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 617

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 57  SDILGSKVISV-GVCGDEDEARR 122
           S  LGSK+IS+ G CGD D ARR
Sbjct: 263 STFLGSKLISMYGKCGDLDSARR 285


>At3g07780.1 68416.m00949 expressed protein
          Length = 566

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 382 CEVYCIATQTCHWCICC*CSKWT 450
           C  +  A  TC W  C  CS WT
Sbjct: 231 CNKFDFAVNTCRWIGCDVCSHWT 253


>At5g42920.2 68418.m05233 expressed protein
          Length = 819

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 365 NLKIIVVKFTVSLPKPVTGVSAADVLNG--HSILNELYPGDTGDDSPH 502
           +LK++++KF   L   V  V A    +G   +I   L+P D G + PH
Sbjct: 358 SLKLVILKFEYLLKLNVVCVGAEGSQDGPEKNIFCNLFPDDAGLEPPH 405


>At5g42920.1 68418.m05232 expressed protein
          Length = 702

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 365 NLKIIVVKFTVSLPKPVTGVSAADVLNG--HSILNELYPGDTGDDSPH 502
           +LK++++KF   L   V  V A    +G   +I   L+P D G + PH
Sbjct: 241 SLKLVILKFEYLLKLNVVCVGAEGSQDGPEKNIFCNLFPDDAGLEPPH 288


>At4g24830.1 68417.m03557 arginosuccinate synthase family contains
           Pfam profile: PF00764 arginosuccinate synthase
          Length = 494

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 337 IESHIIIPHKLENYSCEVYC 396
           +++ +I+P   ENY CEV C
Sbjct: 107 LDTSVIVPWLKENYGCEVVC 126


>At3g16060.1 68416.m02030 kinesin motor family protein similar to
           kinesin heavy chain member 2 GB:NP_032468 from [Mus
           musculus]; contains Pfam profile PF00225: Kinesin motor
           domain
          Length = 684

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 248 RRQAEAKIKRVFKKHPLNVQVSVKAED 328
           R  A AKIK V +K PLN + S K E+
Sbjct: 163 RMNAVAKIKVVVRKRPLNKKESTKNEE 189


>At5g48160.1 68418.m05949 tropomyosin-related contains weak
           similarity to Tropomyosin, muscle (Allergen Ani s 3).
           (Swiss-Prot:Q9NAS5) [Anisakis simplex]
          Length = 574

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 382 CEVYCIATQTCHWCICC*CSKWT 450
           C  +  +  TC W  C  CS WT
Sbjct: 232 CNKFDFSVNTCRWIGCDLCSHWT 254


>At3g58340.1 68416.m06503 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 325

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/53 (26%), Positives = 31/53 (58%)
 Frame = +2

Query: 212 KETTSQN*KRI*RRQAEAKIKRVFKKHPLNVQVSVKAEDGTALNLILSYLINL 370
           KE+   N  ++   Q E+ ++R+FKKHP ++ V  + ++       +++L+N+
Sbjct: 184 KESIDVNGFQVLPSQVES-VRRIFKKHP-DIAVGFQVKNQHLRKTFMNFLVNV 234


>At1g26410.1 68414.m03221 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 552

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 495 ESSPVSPGYSSFKIECPFRTSAADTPVTGLGSDTVNFTTIIFKFMRY-DNMRFNA 334
           E+    P +  F IEC    +  + P+T + S   N TT +  ++ Y  N RF++
Sbjct: 42  EAPVTKPNFGKF-IECLRDRTTPENPITDVISIADNSTTFLSSYVSYTKNKRFSS 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,755,885
Number of Sequences: 28952
Number of extensions: 248221
Number of successful extensions: 621
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)