Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10677
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.14 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.97 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.97 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.97 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
 Frame = +2

Query: 11  PDPHRDGR-HGRQEERL---HHRCHKQTGHHRPGHPASRPSGPAHLHPAAGREVPRGHP 175
           P PH     HG         HH  H  T HH+   P +  S PA +        P  HP
Sbjct: 412 PGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIG---HTPHHHP 467



 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 277 PASLQAGHSPGHRGGDP 327
           PA++Q GH+P H    P
Sbjct: 454 PAAIQIGHTPHHHPHPP 470


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +2

Query: 260 DLTEICQRACKLAIRQAIEAEIHRERSRXXXXXXXVMDMDEEDP 391
           D    C   CK+ +R  +E+E+ + + R          M + DP
Sbjct: 338 DFEHPCVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 381


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +2

Query: 260 DLTEICQRACKLAIRQAIEAEIHRERSRXXXXXXXVMDMDEEDP 391
           D    C   CK+ +R  +E+E+ + + R          M + DP
Sbjct: 253 DFEHPCVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 296


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 724 WCGGATRRTNRQDVSSGLSRWWRCPEV 644
           W G      N  D + G  R+WR P V
Sbjct: 262 WDGSNMVEGNESDHNDGRLRYWRTPSV 288



 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +2

Query: 260 DLTEICQRACKLAIRQAIEAEIHRERSRXXXXXXXVMDMDEEDP 391
           D    C   CK+ +R  +E+E+ + + R          M + DP
Sbjct: 572 DFEHPCVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 615


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 443 RSVSDNDIRKYEMF 484
           +S +D+DI KY+MF
Sbjct: 190 KSCTDSDIEKYKMF 203


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 315 RRRSIARGVASSKPPLPLWTWTR 383
           ++++  +G AS+  P PL+ W R
Sbjct: 243 QQQAAPQGAASANLPSPLYPWMR 265



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 47  EERLHHRCHKQTGHHRP 97
           E ++HH+ H Q  H +P
Sbjct: 165 ESQMHHQMHTQHPHMQP 181


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/41 (21%), Positives = 17/41 (41%)
 Frame = +2

Query: 71  HKQTGHHRPGHPASRPSGPAHLHPAAGREVPRGHPARQPSQ 193
           H+Q  HH+  HP ++            ++ P+    +Q  Q
Sbjct: 811 HQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQ 851


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/29 (24%), Positives = 11/29 (37%)
 Frame = +2

Query: 5   HQPDPHRDGRHGRQEERLHHRCHKQTGHH 91
           H    H   RH  + +  ++  H    HH
Sbjct: 424 HYNHNHNQARHSSKSDNQNNNQHNDQAHH 452


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 86  VRSVCGTDDEDVLLGAHAVHLGEDLVDD 3
           + ++C T DEDV+      +L   L+ D
Sbjct: 155 LEALCWTQDEDVICSTPIGNLSHALLKD 182


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 86  VRSVCGTDDEDVLLGAHAVHLGEDLVDD 3
           + ++C T DED++      +L   L+ D
Sbjct: 208 LEALCWTQDEDIICSTPIGNLSHALLKD 235


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 513 RNQLQIPNKRGSYRGHGYFS 572
           R +   P+K  +YR HGY S
Sbjct: 603 RMRYAAPHKAFTYRMHGYAS 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,260
Number of Sequences: 438
Number of extensions: 4117
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)