Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10677
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 142 2e-34
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 139 2e-33
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 138 4e-33
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 100 2e-21
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 93 1e-19
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 93 1e-19
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 91 9e-19
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 90 2e-18
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 89 4e-18
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 88 5e-18
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 88 6e-18
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 87 9e-18
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 85 6e-17
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 83 2e-16
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 81 7e-16
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 80 1e-15
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 80 2e-15
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 79 3e-15
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 78 5e-15
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 78 7e-15
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 77 1e-14
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 76 2e-14
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 76 2e-14
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 75 4e-14
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 75 5e-14
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 75 5e-14
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 73 3e-13
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 72 3e-13
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 72 3e-13
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 72 3e-13
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 71 6e-13
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 71 6e-13
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 71 6e-13
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 71 8e-13
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 70 2e-12
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 68 6e-12
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 67 1e-11
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 66 2e-11
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 64 1e-10
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 62 4e-10
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 61 6e-10
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 60 1e-09
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 60 2e-09
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 59 3e-09
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 59 3e-09
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 58 8e-09
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 56 2e-08
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 56 2e-08
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 56 3e-08
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 56 3e-08
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 55 4e-08
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 55 4e-08
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 53 2e-07
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 51 9e-07
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 51 9e-07
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 48 6e-06
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 46 3e-05
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 38 0.005
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 38 0.007
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 36 0.021
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 36 0.037
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 35 0.048
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 35 0.048
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 34 0.11
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 33 0.15
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 33 0.15
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 33 0.15
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 33 0.20
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 33 0.20
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 33 0.20
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 33 0.20
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 33 0.26
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 32 0.34
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 31 0.79
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 31 0.79
At4g05340.1 68417.m00816 hypothetical protein 31 1.0
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ... 31 1.0
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 30 1.4
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 30 1.8
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 30 1.8
At3g63100.1 68416.m07087 glycine-rich protein 29 2.4
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 29 2.4
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 29 2.4
At5g39020.1 68418.m04722 protein kinase family protein contains ... 29 4.2
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 29 4.2
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 28 5.6
At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2) ide... 28 5.6
At4g25390.2 68417.m03653 protein kinase family protein contains ... 28 5.6
At4g25390.1 68417.m03652 protein kinase family protein contains ... 28 5.6
At3g60730.1 68416.m06794 pectinesterase family protein contains ... 28 5.6
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 28 5.6
At5g38250.1 68418.m04611 serine/threonine protein kinase, putati... 28 7.3
At5g38240.1 68418.m04610 serine/threonine protein kinase, putati... 28 7.3
At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase... 28 7.3
At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase... 28 7.3
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 28 7.3
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 27 9.7
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 9.7
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 9.7
At1g75910.1 68414.m08817 family II extracellular lipase 4 (EXL4)... 27 9.7
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 142 bits (344), Expect = 2e-34
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
V+NQ+LTEMDGM AKK VFIIGATNRPDIIDPA+LRPGRLDQLIYIPLPDE+SR I ++
Sbjct: 604 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKS 663
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
LRKSP+AKDVDL +AK TQGFS
Sbjct: 664 CLRKSPVAKDVDLRALAKYTQGFS 687
Score = 103 bits (246), Expect = 2e-22
Identities = 52/84 (61%), Positives = 63/84 (75%)
Frame = +2
Query: 257 ADLTEICQRACKLAIRQAIEAEIHRERSRXXXXXXXVMDMDEEDPVPEISRAHFEEAMKF 436
AD+TEICQR+CK AIR+ IE +I +ER R M+ DEE+ + EI HFEE+MK+
Sbjct: 689 ADITEICQRSCKYAIRENIEKDIEKERKRAESPE--AMEEDEEE-IAEIKAGHFEESMKY 745
Query: 437 ARRSVSDNDIRKYEMFAQTLQQSR 508
ARRSVSD DIRKY+ FAQTLQQSR
Sbjct: 746 ARRSVSDADIRKYQAFAQTLQQSR 769
Score = 81.8 bits (193), Expect = 4e-16
Identities = 37/83 (44%), Positives = 59/83 (71%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
+++Q+LT MDG+ ++ +V ++GATNRP+ IDPA+ R GR D+ I I +PDE R +LR
Sbjct: 328 IVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRI 387
Query: 183 NLRKSPIAKDVDLSYIAKVTQGF 251
+ + +A+DVDL ++K T G+
Sbjct: 388 HTKNMKLAEDVDLERVSKDTHGY 410
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 139 bits (336), Expect = 2e-33
Identities = 67/84 (79%), Positives = 73/84 (86%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
V+NQ+LTEMDGM AKK VFIIGATNRPDIID A+LRPGRLDQLIYIPLPDE SR I +A
Sbjct: 604 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKA 663
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
LRKSPIAKDVD+ +AK TQGFS
Sbjct: 664 ALRKSPIAKDVDIGALAKYTQGFS 687
Score = 104 bits (250), Expect = 5e-23
Identities = 53/84 (63%), Positives = 62/84 (73%)
Frame = +2
Query: 257 ADLTEICQRACKLAIRQAIEAEIHRERSRXXXXXXXVMDMDEEDPVPEISRAHFEEAMKF 436
AD+TEICQRACK AIR+ IE +I +E+ R M+ D D V EI AHFEE+MK+
Sbjct: 689 ADITEICQRACKYAIRENIEKDIEKEKRRSENPE--AMEEDGVDEVSEIKAAHFEESMKY 746
Query: 437 ARRSVSDNDIRKYEMFAQTLQQSR 508
ARRSVSD DIRKY+ FAQTLQQSR
Sbjct: 747 ARRSVSDADIRKYQAFAQTLQQSR 770
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/83 (45%), Positives = 59/83 (71%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
+++Q+LT MDG+ ++ +V ++GATNRP+ IDPA+ R GR D+ I I +PDE R +LR
Sbjct: 327 IVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRI 386
Query: 183 NLRKSPIAKDVDLSYIAKVTQGF 251
+ + +A+DVDL I+K T G+
Sbjct: 387 HTKNMKLAEDVDLERISKDTHGY 409
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 138 bits (334), Expect = 4e-33
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
V+NQ+LTEMDGM AKK VFIIGATNRPDIID A+LRPGRLDQLIYIPLPDE SR I +A
Sbjct: 603 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKA 662
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
LRKSP+AKDVD++ +AK TQGFS
Sbjct: 663 CLRKSPVAKDVDVTALAKYTQGFS 686
Score = 104 bits (250), Expect = 5e-23
Identities = 54/84 (64%), Positives = 61/84 (72%)
Frame = +2
Query: 257 ADLTEICQRACKLAIRQAIEAEIHRERSRXXXXXXXVMDMDEEDPVPEISRAHFEEAMKF 436
AD+TEICQRACK AIR+ IE +I ER R DM +D V EI AHFEE+MK+
Sbjct: 688 ADITEICQRACKYAIRENIEKDIENERRRSQNPEAMEEDM-VDDEVSEIRAAHFEESMKY 746
Query: 437 ARRSVSDNDIRKYEMFAQTLQQSR 508
ARRSVSD DIRKY+ FAQTLQQSR
Sbjct: 747 ARRSVSDADIRKYQAFAQTLQQSR 770
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/83 (45%), Positives = 59/83 (71%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
+++Q+LT MDG+ ++ +V ++GATNRP+ IDPA+ R GR D+ I I +PDE R +LR
Sbjct: 327 IVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRI 386
Query: 183 NLRKSPIAKDVDLSYIAKVTQGF 251
+ + +A+DVDL I+K T G+
Sbjct: 387 HTKNMKLAEDVDLERISKDTHGY 409
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/85 (55%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
++NQ L E+DG G ++NV++IGATNRPD++DPA LRPGR L+Y+PLP+ R +IL+A
Sbjct: 648 LLNQFLVELDG-GERRNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKA 706
Query: 183 NLRKSPIAKDVDLSYIAKVT-QGFS 254
RK PI VDL IAK +GFS
Sbjct: 707 IARKKPIDPSVDLDGIAKNNCEGFS 731
Score = 64.5 bits (150), Expect = 7e-11
Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = +3
Query: 3 VINQILTEMDGMGAK--KN--------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 152
++ Q+LT MDG G K KN V +IGATNRPD +DPA+ R GR + I + PD
Sbjct: 353 IVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPD 412
Query: 153 EKSREAILRANLRKSPIAKDVDLSYIAKVTQGF 251
E +R IL +K + D IA++T GF
Sbjct: 413 EDARAEILSVVAQKLRLEGPFDKKRIARLTPGF 445
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 93.5 bits (222), Expect = 1e-19
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
+NQILTEMDG V +I ATNRP+I+D A+LRPGR D+ + + LPD + RE IL+ +
Sbjct: 346 LNQILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGREEILKVH 405
Query: 186 LRKSPIAKDVDLSYIAKVTQGFS 254
R + KDV LS IA T GFS
Sbjct: 406 SRSKKLDKDVSLSVIAMRTPGFS 428
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/84 (48%), Positives = 62/84 (73%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
V++Q+L E+DG+ + V +I ATNRPD ID A+LRPGR D+L+Y+ P+E REAIL+
Sbjct: 846 VMSQLLVELDGLHQRVGVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAILKI 905
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
+LRK P + D+ L +A +T+G++
Sbjct: 906 HLRKIPCSSDICLKELASITKGYT 929
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
++ +L MDG+ V +I ATNRPD I+PA+ RPGRLD+ I I +P R IL
Sbjct: 504 MVATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPSSTQRSDILHI 563
Query: 183 NLR-KSPIAKDVDLSYIAKVTQGF 251
LR ++ + +A T GF
Sbjct: 564 ILRGMRHSLSNIQVEQLAMATHGF 587
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 90.6 bits (215), Expect = 9e-19
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
+NQ+LTEMDG + V ++GATNR D++DPA+ RPGR D+++ + PD+ RE+ILR +
Sbjct: 449 LNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVH 508
Query: 186 LRKS--PIAKDVDLSYIAKVTQGFSALT*RRYASEPA 290
+ K P+ DV+L IA +T GF+ +E A
Sbjct: 509 VSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAA 545
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 89.8 bits (213), Expect = 2e-18
Identities = 41/97 (42%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
+NQ+LTEMDG + V ++GATNR D++DPA+ RPGR D+++ + PD+ RE+IL+ +
Sbjct: 453 LNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKVH 512
Query: 186 LRKS--PIAKDVDLSYIAKVTQGFSALT*RRYASEPA 290
+ K P+ DV+L+ IA +T GF+ +E A
Sbjct: 513 VSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAA 549
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 88.6 bits (210), Expect = 4e-18
Identities = 42/84 (50%), Positives = 56/84 (66%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
V+NQ LTE+DG+ VF+ AT+RPD++DPA+LRPGRLD+L+ P R IL
Sbjct: 964 VVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRPGRLDRLLLCDFPSPPERLEILTV 1023
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
RK +A D+DL IA +T+GFS
Sbjct: 1024 LSRKLLMADDIDLEPIALMTEGFS 1047
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 88.2 bits (209), Expect = 5e-18
Identities = 41/95 (43%), Positives = 57/95 (60%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
INQ+LTEMDG V ++ ATNRPD++D A+LRPGR D+ + + PD R IL+ +
Sbjct: 373 INQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVH 432
Query: 186 LRKSPIAKDVDLSYIAKVTQGFSALT*RRYASEPA 290
R I KDVD +A+ T GF+ + +E A
Sbjct: 433 SRGKAIGKDVDYEKVARRTPGFTGADLQNLMNEAA 467
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/83 (45%), Positives = 57/83 (68%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
++Q+L EMDG + + ++ ATN PDI+DPA+ RPGR D+ I +P PD + RE IL
Sbjct: 481 LHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSPDVRGREEILELY 540
Query: 186 LRKSPIAKDVDLSYIAKVTQGFS 254
L+ P+++DVD+ IA+ T GF+
Sbjct: 541 LQGKPMSEDVDVKAIARGTPGFN 563
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 87.4 bits (207), Expect = 9e-18
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
INQ+LTEMDG V ++ ATNRPD++D A+LRPGR D+ + + PD R IL+ +
Sbjct: 385 INQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVH 444
Query: 186 LRKSPIAKDVDLSYIAKVTQGFSALT*RRYASEPA 290
R + KDVD +A+ T GF+ + +E A
Sbjct: 445 SRGKALGKDVDFDKVARRTPGFTGADLQNLMNEAA 479
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 84.6 bits (200), Expect = 6e-17
Identities = 37/81 (45%), Positives = 54/81 (66%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
+NQ+L +DG + V I +TNRPDI+DPA++RPGR D+ I+IP P R IL+ +
Sbjct: 533 LNQLLVSLDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVH 592
Query: 186 LRKSPIAKDVDLSYIAKVTQG 248
RK P+A+D+D +A +T G
Sbjct: 593 ARKKPMAEDLDYMAVASMTDG 613
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 83.0 bits (196), Expect = 2e-16
Identities = 39/80 (48%), Positives = 61/80 (76%), Gaps = 2/80 (2%)
Frame = +3
Query: 3 VINQILTEMDGMG-AKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSREAIL 176
V++Q+L E+DG+ + +++FIIGA+NRPD+IDPA+LRPGR D+L+Y+ + D RE +L
Sbjct: 779 VVSQMLAEIDGLSDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNADASYRERVL 838
Query: 177 RANLRKSPIAKDVDLSYIAK 236
+A RK +++DV L +AK
Sbjct: 839 KALTRKFKLSEDVSLYSVAK 858
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 81.0 bits (191), Expect = 7e-16
Identities = 38/83 (45%), Positives = 50/83 (60%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
+NQ+LTEMDG V ++ ATNR DI+D A+LRPGR D+ + + +PD K R IL+ +
Sbjct: 350 LNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVH 409
Query: 186 LRKSPIAKDVDLSYIAKVTQGFS 254
DV L IA T GFS
Sbjct: 410 AGNKKFDNDVSLEIIAMRTPGFS 432
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/84 (42%), Positives = 56/84 (66%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
+++ +LTEMDG+ K + ++ ATNRP ID A++RPGR D ++Y+P PD ++R IL+
Sbjct: 410 LLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQV 469
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
+ R + DVDL IA+ T F+
Sbjct: 470 HTRNMTLGDDVDLRKIAEETDLFT 493
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 VINQILTEMDG---MGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAI 173
+ +Q+ T MD + V ++ +TNR D IDPA+ R GR D L+ + P+E+ R I
Sbjct: 145 IASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKI 204
Query: 174 LRANLRKSPIAKDVDLSYIAKVTQGF 251
L+ +K + VDL IA G+
Sbjct: 205 LQLYTKKVNLDPSVDLQAIAISCNGY 230
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
+NQ+L E+DG + + ++ ATN P+ +D A++RPGR D+ I +P PD + R IL ++
Sbjct: 347 LNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESH 406
Query: 186 LRKSPIAKDVDLSYIAKVTQGFS 254
+ K A+DVDL IA+ T GFS
Sbjct: 407 MSKVLKAEDVDLMIIARGTPGFS 429
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 79.0 bits (186), Expect = 3e-15
Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Frame = +3
Query: 12 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLR 191
++L ++DG V +I ATNRPD++DPA+LRPGRLD+ I IPLP+E+SR IL+ +
Sbjct: 265 ELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK--IH 322
Query: 192 KSPIAK--DVDLSYIAKVTQGFSALT*RRYASE 284
S IAK ++D I K+ +GF+ R +E
Sbjct: 323 ASGIAKHGEIDYEAIVKLGEGFNGADLRNICTE 355
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 78.2 bits (184), Expect = 5e-15
Identities = 37/83 (44%), Positives = 49/83 (59%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
+NQ+LTEMDG V ++ ATNR DI+D A+LRPGR D+ + + +PD K R IL+ +
Sbjct: 343 LNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVH 402
Query: 186 LRKSPIAKDVDLSYIAKVTQGFS 254
V L IA T GFS
Sbjct: 403 SGNKKFESGVSLEVIAMRTPGFS 425
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 77.8 bits (183), Expect = 7e-15
Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Frame = +3
Query: 12 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLR 191
++L ++DG V +I ATNRPD++DPA+LRPGRLD+ I IPLP+E+SR IL+ +
Sbjct: 265 ELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILK--IH 322
Query: 192 KSPIAK--DVDLSYIAKVTQGFSALT*RRYASE 284
+ IAK ++D I K+ +GF+ R +E
Sbjct: 323 AAGIAKHGEIDYEAIVKLAEGFNGADLRNICTE 355
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 77.0 bits (181), Expect = 1e-14
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
V++ +L +DG+ ++ +V +IGATN PD IDPA+ RPGR D+ IY PLP R AI+
Sbjct: 844 VVSTLLALLDGLKSRGSVVVIGATNYPDAIDPALRRPGRFDREIYFPLPSVDDRAAIISL 903
Query: 183 NLRKSP-IAKDVDLSYIAKVTQGFS 254
+ RK P L +IAK T GF+
Sbjct: 904 HTRKWPKPVSGYLLKWIAKETAGFA 928
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 76.2 bits (179), Expect = 2e-14
Identities = 39/95 (41%), Positives = 55/95 (57%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
+NQ+L E+DG K V +GATNR D++DPA+LRPGR D+ I + P+ K R IL+ +
Sbjct: 561 LNQLLIELDGFDTGKGVIFLGATNRRDLLDPALLRPGRFDRKIRVRPPNAKGRLDILKIH 620
Query: 186 LRKSPIAKDVDLSYIAKVTQGFSALT*RRYASEPA 290
K ++ VDLS A G+S + E A
Sbjct: 621 ASKVKMSDSVDLSSYASNLPGWSGAKLAQLVQEAA 655
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 76.2 bits (179), Expect = 2e-14
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
++NQ+LT++DG+ A NV +IG TNR D++D A+LRPGRL+ + I LPDE R IL+
Sbjct: 347 IVNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQI 406
Query: 183 NLRK----SPIAKDVDLSYIAKVTQGFS 254
+ K S + D++L +A T+ +S
Sbjct: 407 HTNKMKENSFLGTDINLQELAARTKNYS 434
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 75.4 bits (177), Expect = 4e-14
Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
+NQ+L EMDG G V ++ TNRPDI+D A+LRPGR D+ I I PD K R+ I +
Sbjct: 445 LNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIY 504
Query: 186 LRKSPIAKDVDLSY----IAKVTQGFSALT*RRYASEPA 290
L+K I D + SY +A +T GF+ +E A
Sbjct: 505 LKK--IKLDHEPSYYSQRLAALTPGFAGADIANVCNEAA 541
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 74.9 bits (176), Expect = 5e-14
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
+NQ+LTEMDG + V +I ATNRP+ +D A+ RPGR + + + PD++ R IL +
Sbjct: 454 LNQLLTEMDGFESDTKVIVIAATNRPEALDSALCRPGRFSRKVLVAEPDQEGRRKILAIH 513
Query: 186 LRKSPIAKDVDL--SYIAKVTQGF 251
LR P+ +D L +A +T GF
Sbjct: 514 LRDVPLEEDAFLICDLVASLTPGF 537
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 74.9 bits (176), Expect = 5e-14
Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
+NQ+L EMDG G V ++ TNRPDI+D A+LRPGR D+ I I PD K R+ I +
Sbjct: 451 LNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIY 510
Query: 186 LRKSPIAKDVDLSY----IAKVTQGFSALT*RRYASEPA 290
L+K I D + SY +A +T GF+ +E A
Sbjct: 511 LKK--IKLDHEPSYYSQRLAALTPGFAGADIANVCNEAA 547
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 72.5 bits (170), Expect = 3e-13
Identities = 32/81 (39%), Positives = 53/81 (65%)
Frame = +3
Query: 12 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLR 191
++L ++DG + + + +I ATNR DI+DPA++R GRLD+ I P P E++R IL+ + R
Sbjct: 297 ELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSR 356
Query: 192 KSPIAKDVDLSYIAKVTQGFS 254
K + DV+ +A+ T F+
Sbjct: 357 KMNVHPDVNFEELARSTDDFN 377
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 72.1 bits (169), Expect = 3e-13
Identities = 39/103 (37%), Positives = 60/103 (58%)
Frame = +3
Query: 12 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLR 191
++L ++DG A + ++ ATNR DI+D A+LRPGR+D+ I P P+E+SR IL+ + R
Sbjct: 288 ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSR 347
Query: 192 KSPIAKDVDLSYIAKVTQGFSALT*RRYASEPASWPFARPSRR 320
K + + +DL IA+ G S + +E FA RR
Sbjct: 348 KMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGM--FALRERR 388
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 72.1 bits (169), Expect = 3e-13
Identities = 39/103 (37%), Positives = 60/103 (58%)
Frame = +3
Query: 12 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLR 191
++L ++DG A + ++ ATNR DI+D A+LRPGR+D+ I P P+E+SR IL+ + R
Sbjct: 288 ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSR 347
Query: 192 KSPIAKDVDLSYIAKVTQGFSALT*RRYASEPASWPFARPSRR 320
K + + +DL IA+ G S + +E FA RR
Sbjct: 348 KMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGM--FALRERR 388
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 72.1 bits (169), Expect = 3e-13
Identities = 35/106 (33%), Positives = 62/106 (58%)
Frame = +3
Query: 12 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLR 191
+I+ ++DG A+ N+ ++ ATNRPD +DPA+LRPGRLD+ + LPD +SR I + + R
Sbjct: 294 EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353
Query: 192 KSPIAKDVDLSYIAKVTQGFSALT*RRYASEPASWPFARPSRRRSI 329
+D+ +A++ + R +E +A +RR+++
Sbjct: 354 TMNCERDIRFELLARLCPNSTGADIRSVCTEAGM--YAIRARRKTV 397
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 71.3 bits (167), Expect = 6e-13
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
++ ++L +MDG NV +I ATNR D +DPA+LRPGRLD+ I PLPD + + + +
Sbjct: 278 ILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQV 337
Query: 183 NLRKSPIAKDVDL-SYIAK 236
K ++ +VDL Y+++
Sbjct: 338 CTSKMNLSDEVDLEDYVSR 356
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 71.3 bits (167), Expect = 6e-13
Identities = 37/106 (34%), Positives = 60/106 (56%)
Frame = +3
Query: 12 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLR 191
+IL ++DG A+ N+ ++ ATNRPDI+DPA+LRPGRLD+ + LPD + R I + + R
Sbjct: 331 EILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTR 390
Query: 192 KSPIAKDVDLSYIAKVTQGFSALT*RRYASEPASWPFARPSRRRSI 329
+D+ +A + + R E +A +RR+S+
Sbjct: 391 TMSCERDIRFELLAGLCPNSTGADIRSVCIEAGM--YAIGARRKSV 434
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 71.3 bits (167), Expect = 6e-13
Identities = 32/81 (39%), Positives = 52/81 (64%)
Frame = +3
Query: 12 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLR 191
++L ++DG + + +I ATNR DI+DPA++R GRLD+ I P P E++R IL+ + R
Sbjct: 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSR 355
Query: 192 KSPIAKDVDLSYIAKVTQGFS 254
K + DV+ +A+ T F+
Sbjct: 356 KMNVNADVNFEELARSTDDFN 376
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 70.9 bits (166), Expect = 8e-13
Identities = 33/81 (40%), Positives = 52/81 (64%)
Frame = +3
Query: 12 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLR 191
++L ++DG ++ +V +I ATNR + +DPA+LRPGR+D+ I PLPD K+R I + +
Sbjct: 314 ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 373
Query: 192 KSPIAKDVDLSYIAKVTQGFS 254
K +A+DV+L FS
Sbjct: 374 KMTLAEDVNLEEFVMTKDEFS 394
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/81 (39%), Positives = 52/81 (64%)
Frame = +3
Query: 12 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLR 191
++L ++DG ++ +V +I ATNR + +DPA+LRPGR+D+ I PLPD K+R I + +
Sbjct: 314 ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 373
Query: 192 KSPIAKDVDLSYIAKVTQGFS 254
K +++DV+L FS
Sbjct: 374 KMTLSEDVNLEEFVMTKDEFS 394
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 68.1 bits (159), Expect = 6e-12
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
Frame = +3
Query: 12 QILTEMDGMGAKKN-VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANL 188
QILTEMDG + V +IGATNR DI+DPA+LR GR D++I + LP + R AIL+ +
Sbjct: 442 QILTEMDGFKVTTSQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHA 501
Query: 189 R----KSPIAKDVDLSYIAKVTQGFS 254
R +S K+ L +A+ T+ F+
Sbjct: 502 RNKFFRSEDEKEELLQEVAENTEDFT 527
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/92 (40%), Positives = 61/92 (66%), Gaps = 8/92 (8%)
Frame = +3
Query: 3 VINQILTEMDGM--------GAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 158
V +++L ++DG+ G++K V ++ ATN P ID A+ R RL++ IYIPLPD +
Sbjct: 359 VKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDFE 416
Query: 159 SREAILRANLRKSPIAKDVDLSYIAKVTQGFS 254
SR+A++ NLR +A DV++ +A+ T+G+S
Sbjct: 417 SRKALININLRTVEVASDVNIEDVARRTEGYS 448
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +2
Query: 260 DLTEICQRACKLAIRQAIEAEIHRERSRXXXXXXXVMDMDEEDPVPEISRAHFEEAMKFA 439
DLT +C+ A +R+ I + E D DPV + FEEA++
Sbjct: 451 DLTNVCRDASMNGMRRKIAGKTRDEIKNMSK------DDISNDPV---AMCDFEEAIRKV 501
Query: 440 RRSVSDNDIRKYE 478
+ SVS +DI K+E
Sbjct: 502 QPSVSSSDIEKHE 514
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 66.5 bits (155), Expect = 2e-11
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Frame = +3
Query: 9 NQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
N+ + DG+ K + V ++ ATNRP +D A++R RL + + + LPD +R IL
Sbjct: 1087 NEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIR--RLPRRLMVNLPDATNRSKILSV 1144
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFSALT*RRYASEPASWPFAR--PSRRRSIARGVASSKP 356
L K IA DVDL IA +T G+S + A +P ++ A ++P
Sbjct: 1145 ILAKEEIAPDVDLEAIANMTDGYSGSDLKNLCVTAAHFPIREILEKEKKEKTAAQAENRP 1204
Query: 357 PLPLWTWT 380
PL++ T
Sbjct: 1205 TPPLYSCT 1212
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 63.7 bits (148), Expect = 1e-10
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Frame = +3
Query: 9 NQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
N+ + DG+ K + V ++ ATNRP +D A++R RL + + + LPD +R IL
Sbjct: 1074 NEFMINWDGLRTKDKERVLVLAATNRPFDLDEAVIR--RLPRRLMVNLPDSANRSKILSV 1131
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFSALT*RRYASEPASWPFARPSRRRSIARGVASSK 353
L K +A+DVDL IA +T G+S + A P + R VA ++
Sbjct: 1132 ILAKEEMAEDVDLEAIANMTDGYSGSDLKNLCVTAAHLPIREILEKEKKERSVAQAE 1188
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 62.1 bits (144), Expect = 4e-10
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Frame = +3
Query: 9 NQILTEMDGMGAKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
++ L + DG+ + + V IIGATN+P +D A+LR RL + IY+PLPD R+ + +
Sbjct: 337 SEFLIQFDGVTSNPDDLVIIIGATNKPQELDDAVLR--RLVKRIYVPLPDSNVRKLLFKT 394
Query: 183 NLRKSPIA-KDVDLSYIAKVTQGFSALT*RRYASEPASWP 299
L+ P + D D+ I K T+G+S + E A P
Sbjct: 395 KLKCQPHSLSDGDIDKIVKETEGYSGSDLQALCEEAAMMP 434
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 61.3 bits (142), Expect = 6e-10
Identities = 33/90 (36%), Positives = 47/90 (52%)
Frame = +3
Query: 21 TEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSP 200
T +D ++ V I ATNRPD +D +R GR+D+ +YI LPD K R I +
Sbjct: 625 TGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKN 684
Query: 201 IAKDVDLSYIAKVTQGFSALT*RRYASEPA 290
+A+D+D + T GFS R +E A
Sbjct: 685 LAEDIDFGKLVFRTVGFSGADIRNLVNEAA 714
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family
Length = 1025
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Frame = +3
Query: 9 NQILTEMDGM--GAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
N+ + DG+ K+ V ++ ATNRP +D A++R RL + + LPD +SR IL+
Sbjct: 847 NEFIINWDGLRTNEKERVLVLAATNRPFDLDEAVIR--RLPHRLMVGLPDARSRSKILKV 904
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
L K ++ D D+ +A +T G+S
Sbjct: 905 ILSKEDLSPDFDIDEVASMTNGYS 928
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 59.7 bits (138), Expect = 2e-09
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Frame = +3
Query: 9 NQILTEMDGMGA--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
N+ + DG+ ++ V ++ ATNRP +D A++R RL + + + LPD +R IL+
Sbjct: 944 NEFMMHWDGLTTQERERVLVLAATNRPFDLDEAVIR--RLPRRLMVGLPDTSNRAFILKV 1001
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFSALT*RRYASEPASWPFAR--PSRRRSIARGVASSKP 356
L K ++ D+D+ IA +T G+S + A P +R +A K
Sbjct: 1002 ILAKEDLSPDLDIGEIASMTNGYSGSDLKNLCVTAAHRPIKEILEKEKRERDAALAQGKV 1061
Query: 357 PLPL 368
P PL
Sbjct: 1062 PPPL 1065
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +3
Query: 12 QILTEMDGMGAK-KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANL 188
++L +M G+G + V ++ ATN P +D AI R R D+ IYIPLP+ K+R+ + + +L
Sbjct: 255 ELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPEAKARQHMFKVHL 312
Query: 189 RKSP-IAKDVDLSYIAKVTQGFS 254
+P + D Y+ + T+GFS
Sbjct: 313 GDTPHNLTEPDFEYLGQKTEGFS 335
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 9 NQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
N+ + DG+ +K + + I+GATNRP +D A++R RL + IY+ LPD ++R IL+
Sbjct: 475 NEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRLKILKI 532
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
L + D +AK T+G+S
Sbjct: 533 FLTPENLESDFQFEKLAKETEGYS 556
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 57.6 bits (133), Expect = 8e-09
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Frame = +3
Query: 12 QILTEMDGMGA-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANL 188
Q L EM+G + + + +IGATNRP +D A R RL + +YIPLP ++R I++ L
Sbjct: 133 QFLIEMEGFDSGSEQILLIGATNRPQELDEAARR--RLTKRLYIPLPSSEARAWIIQNLL 190
Query: 189 RKSPI--AKDVDLSYIAKVTQGFSALT*RRYASEPASWPFARPSRR 320
+K + D D++ I +T+G+S + + P +R
Sbjct: 191 KKDGLFTLSDDDMNIICNLTEGYSGSDMKNLVKDATMGPLREALKR 236
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 9 NQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
N+ + DG+ +K + + I+GATNRP +D A++R RL + IY+ LPD ++R IL+
Sbjct: 274 NEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRLKILKI 331
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
L + + +AK T+G+S
Sbjct: 332 FLTPENLETGFEFDKLAKETEGYS 355
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 56.0 bits (129), Expect = 2e-08
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Frame = +3
Query: 9 NQILTEMDGM--GAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
N+ +T DG+ A + ++ ATNRP +D AI+R R ++ I + LP +SRE ILR
Sbjct: 537 NEFMTHWDGLMSNAGDRILVLAATNRPFDLDEAIIR--RFERRIMVGLPSVESREKILRT 594
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFSALT*RRYASEPASWP 299
L K +++D +A++T G+S + + + A P
Sbjct: 595 LLSKEK-TENLDFQELAQMTDGYSGSDLKNFCTTAAYRP 632
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +3
Query: 54 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPIAKDVDLSYIA 233
V ++ ATNRP +D AILR RL Q I +PD + R IL+ L+ + D+D +IA
Sbjct: 224 VMVLAATNRPSELDEAILR--RLPQAFEIGIPDRRERAEILKVTLKGERVEPDIDFDHIA 281
Query: 234 KVTQGFS 254
++ +G++
Sbjct: 282 RLCEGYT 288
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
+++ +L MDG+ ++ V +IGATNR D ID A+ RPGR D+ LP ++R IL
Sbjct: 506 IVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFSLPGCEARAEILDI 565
Query: 183 NLRK 194
+ RK
Sbjct: 566 HTRK 569
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +3
Query: 9 NQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
N+ ++ DG+ K + + ++ ATNRP +D AI+R R ++ I + LP ++RE ILR
Sbjct: 644 NEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPAVENREKILRT 701
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
L K + +++D +A +T+G++
Sbjct: 702 LLAKEKVDENLDYKELAMMTEGYT 725
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +3
Query: 9 NQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
N+ ++ DG+ K + + ++ ATNRP +D AI+R R ++ I + LP ++RE ILR
Sbjct: 639 NEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPAVENREKILRT 696
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
L K + +++D +A +T+G++
Sbjct: 697 LLAKEKVDENLDYKELAMMTEGYT 720
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/80 (35%), Positives = 44/80 (55%)
Frame = +3
Query: 6 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN 185
INQ+L E+DG + V ++ T ID A+ RPGR+D++ ++ P E RE IL
Sbjct: 548 INQLLVELDGFEKQDGVVLMATTRNHKQIDEALRRPGRMDRVFHLQSPTEMERERILHNA 607
Query: 186 LRKSPIAKDVDLSYIAKVTQ 245
++ + VDL KV++
Sbjct: 608 AEETMDRELVDLVDWRKVSE 627
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 50.8 bits (116), Expect = 9e-07
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +3
Query: 12 QILTEMDGMGAKKN-VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANL 188
++L +MDG+ VF++ ATN P +D A+LR RL++ I +PLPD ++R + +
Sbjct: 237 ELLIQMDGLQKTNELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDPEARRGMFEMLI 294
Query: 189 RKSPIAKDVDLSYIAKVTQGFSALT*RRYASEPASWPFAR 308
P + + + + ++G+S R E A P R
Sbjct: 295 PSQPGDEPLPHDVLVEKSEGYSGSDIRILCKEAAMQPLRR 334
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 50.8 bits (116), Expect = 9e-07
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +3
Query: 12 QILTEMDGMGAKKN-VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANL 188
++L +MDG+ VF++ ATN P +D A+LR RL++ I +PLPD ++R + +
Sbjct: 228 ELLIQMDGLQKTNELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDPEARRGMFEMLI 285
Query: 189 RKSPIAKDVDLSYIAKVTQGFSALT*RRYASEPASWPFAR 308
P + + + + ++G+S R E A P R
Sbjct: 286 PSQPGDEPLPHDVLVEKSEGYSGSDIRILCKEAAMQPLRR 325
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/84 (32%), Positives = 50/84 (59%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
V++ +L ++DG +K V +I ATNR +DPA++ R D +I LPD ++R+ I+
Sbjct: 448 VLSVLLRQIDGFEQEKKVVVIAATNRKQDLDPALI--SRFDSMIMFDLPDLQTRQEIIAQ 505
Query: 183 NLRKSPIAKDVDLSYIAKVTQGFS 254
++ ++K +L +A+ T+ S
Sbjct: 506 YAKQ--LSKP-ELVQLAQATEAMS 526
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 30 DGMGAKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPI 203
DG +N V ++ ATNRP +D AILR R Q I +PD + R IL+ L+ +
Sbjct: 217 DGFTTDQNARVMVLAATNRPSELDEAILR--RFPQSFEIGMPDCQERAQILKVVLKGESV 274
Query: 204 AKDVDLSYIAKVTQGFS 254
D++ IA++ + ++
Sbjct: 275 ESDINYDRIARLCEDYT 291
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +3
Query: 48 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPIAKD 212
+++ ++ ATNRP +D A+ R+D++I PLP E+ R +L+ L K + D
Sbjct: 485 RDIVLVLATNRPGDLDSAVT--DRIDEVIEFPLPGEEERFKLLKLYLNKYLMGDD 537
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYI 140
++ +L +DG+ + II TN D +DPA+LRPGR+D IY+
Sbjct: 341 LSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDMHIYM 387
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYI 140
++ +L +DG+ + II TN + +DPA+LRPGR+D IY+
Sbjct: 336 LSGLLNCIDGLWSSCGNERIIIFTTNNKEKLDPALLRPGRMDMHIYM 382
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 48 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRK 194
K++ + ATNRP +D A+ R+D+++ PLP E+ R +L L K
Sbjct: 497 KDIVLALATNRPGDLDSAVA--DRVDEVLEFPLPGEEERFKLLNLYLEK 543
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 35.1 bits (77), Expect = 0.048
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 60 IIGATNRPDIIDPAILRPGRLDQLIYI 140
+I TN +++DPA+LRPG +D IY+
Sbjct: 328 VIFTTNNKEVLDPALLRPGCMDMHIYL 354
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 48 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRK 194
K++ + ATNRP +D A+ R+D+ + PLP E+ R +L L K
Sbjct: 498 KDIVLALATNRPGDLDSAVA--DRIDETLEFPLPGEEERFKLLNLYLEK 544
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLD 125
++ +L +DG+ + + II TN + +DPA+LRPGR+D
Sbjct: 338 LSGLLNFVDGLWSSCGEEKIIIFTTNHKEKLDPALLRPGRMD 379
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 48 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRK 194
+++ ++ ATNR +D A+ R+D++I PLP E+ R +L L K
Sbjct: 470 RDIVLVLATNRRGDLDSAVT--DRIDEVIEFPLPGEEERFKLLNLYLNK 516
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLD 125
++ +L +DG+ + + II TN + +DPA+LRPGR+D
Sbjct: 126 LSGLLNFVDGLWSSCVEERIIIFTTNHKEKLDPALLRPGRMD 167
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 42 AKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 152
A + + + T + I DPA+LRPGR+D I+ PL D
Sbjct: 320 ADERIMVFTMTGKEQI-DPAMLRPGRVDVHIHFPLCD 355
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYI 140
++ +LT +DG+ + +I T + +DPA+LRPGR+D I++
Sbjct: 331 LSGLLTCIDGLWSSCGDERIVIFTTTHKERLDPALLRPGRMDMHIHM 377
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 3 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRA 182
V+N +LT+MD + + NV I+ +N ID A + R D Y+ P R ILR+
Sbjct: 306 VVNALLTQMDKLKSAPNVIILTTSNITTAIDVAFV--DRADIKAYVGPPTLHVRYEILRS 363
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYI 140
++ +L +DG+ + I+ TN + +DPA+LRPGR+D I++
Sbjct: 332 LSGLLNFVDGLWSSCGNERIIVFTTNYREKLDPALLRPGRMDMHIHM 378
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLD 125
++ IL +DG+ + I+ TN + +DPA+LRPGR+D
Sbjct: 328 LSGILNFIDGLWSSFGDERIIVFTTNHKERLDPALLRPGRMD 369
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLI 134
++ +L +DG+ + I+ TN + +DPA+LRPGR+D I
Sbjct: 332 LSGLLNFVDGLWSSFGDERIIVFTTNHKERLDPALLRPGRMDMHI 376
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +3
Query: 6 INQILTEMDGMGA---KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAIL 176
++ +L DG+ + + +F+ TN + +DPA+LR GR+D IY+ + S + +L
Sbjct: 347 LSGLLNFTDGLWSCCGSERIFVF-TTNHIEKLDPALLRSGRMDMHIYMSFCNFPSLKILL 405
Query: 177 R 179
+
Sbjct: 406 K 406
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 31.1 bits (67), Expect = 0.79
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +3
Query: 6 INQILTEMDGMGA---KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAIL 176
++ +L DG+ + + +F+ TN + +DPA+LR GR+D I++ S + +L
Sbjct: 338 LSGLLNFTDGLWSCCGSERIFVF-TTNHIEKLDPALLRSGRMDMHIHMSYCTFSSVKILL 396
Query: 177 RANLR-KSPIAKDVDLSYIAKV 239
R L + DV L +A+V
Sbjct: 397 RNYLGFEEGDLNDVVLKELAEV 418
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = +2
Query: 11 PDPHRDGRHGRQEERLHHRCHKQTGHHRPGHPASRPSGPAHLHPAAGREVPRGHPARQPS 190
P PH H HH H HH H S P + P A P R PS
Sbjct: 325 PSPHSKHHHHHHHHHHHHHHHHHNHHHHHHHNLSPKMAP-EVSPVAS-PAPHRSRKRAPS 382
>At4g05340.1 68417.m00816 hypothetical protein
Length = 96
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLD 125
++ +L +DG+ + + II TN + +DPA LRPG++D
Sbjct: 29 LSGLLYFVDGLWSNSVEERIIIFTTNHKEKLDPAFLRPGKMD 70
>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = +2
Query: 35 HGRQEERLHHRCHKQT-----GHHRPGH--PASRPSGPAHLHPAAGREVPRGHPARQPSQ 193
+GR + R H + K+ H P H P+S+P H P P HP+ QP
Sbjct: 65 YGRYQTRNHKKMDKEKVPPPPSPHPPLHSLPSSKPEVKPHPRPTGNPICPVSHPS-QPHT 123
Query: 194 IAYR*GR 214
++ R GR
Sbjct: 124 LSLRSGR 130
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYI 140
++ +L +DG+ + II TN + +D A+LRPGR+D I++
Sbjct: 390 LSGLLNFIDGLWSSCGDERIIIFTTNYKEKLDAALLRPGRMDMHIHM 436
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 6 INQILTEMDGM--GAKKNVFIIGATNRPDIIDPAILRPGRLD 125
++ +L +DG+ II TN D +DPA++R GR+D
Sbjct: 330 LSGLLNAIDGLWSACSDEKIIIFTTNFVDNLDPALIRRGRMD 371
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 6 INQILTEMDGM--GAKKNVFIIGATNRPDIIDPAILRPGRLDQLI 134
++ +L +DG+ I+ TN D +DPA++R GR+D I
Sbjct: 346 LSGLLNSIDGLWSACSGEKIIVFTTNFVDKLDPALIRRGRMDNHI 390
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Frame = +2
Query: 20 HRDGRHGRQ----EERLHHRCHKQTGHHRPGHPASRPSGPAH 133
H RHGR +R HHR H HH GH R G H
Sbjct: 104 HGHRRHGRDHRHGRDRGHHRGHGH--HHHRGHRRGRGRGHGH 143
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 6 INQILTEMDGM--GAKKNVFIIGATNRPDIIDPAILRPGRLDQLI 134
++ +L +DG+ I+ TN D +DPA++R GR+D I
Sbjct: 345 LSGLLNAIDGLWSACSGEKIIVFTTNYLDKLDPALIRRGRMDNHI 389
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 897
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +2
Query: 314 EAEIHRERSRXXXXXXXVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQT 493
E E ERSR D P S + + RRSVS + +R ++
Sbjct: 765 EKEKEEERSRHRRAENSSKDKRRRSPTSNESSDDSKRKSRSRRRSVSPSPVR-----SRR 819
Query: 494 LQQSRASEPTSDSQQTRELQGARVLQRATSP-RSRRRGVTT 613
+ S +S+ +SD + + ++ R+ SP +SRRR V++
Sbjct: 820 KRSSPSSDESSDDSKRK--SSSKRKNRSPSPGKSRRRHVSS 858
>At5g39020.1 68418.m04722 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 813
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 230 DVRQVNVLSDRRFAKVGAQDGLAGLLVRQRDVDELVQTAGT 108
D++ N+L D F A GLA L ++ + L+ T GT
Sbjct: 619 DIKPQNILLDDNFCPKVADFGLAKLCEKRESILSLIDTRGT 659
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 60 IIGATNRPDIIDPAILRPGRLDQLI 134
I+ TN D +DPA++R GR+D+ I
Sbjct: 365 IVFTTNFVDKLDPALIRKGRMDKHI 389
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 60 IIGATNRPDIIDPAILRPGRLDQLI 134
I+ TN D +DPA++R GR+D+ I
Sbjct: 367 IVFTTNFIDKLDPALIRKGRMDKHI 391
>At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2)
identical to phage-type RNA polymerase rpoT2 [Arabidopsis
thaliana] GI:11340683
Length = 1011
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 293 ACRLAGISPSGQRTEALRHLGDVRQVNVLSDRRFAKVGAQDGLAGLL 153
AC+ AG+ +G H DV ++N++ +F ++ +Q L LL
Sbjct: 931 ACKRAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLL 977
>At4g25390.2 68417.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 497
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 233 GDVRQVNVLSDRRFAKVGAQDGLAGLLVRQRDVDELVQTAGTQDGRVDDVRSVCGT 66
GD++ NVL D F+ A GLA L Q ++ + G V++V SV T
Sbjct: 224 GDIKPSNVLLDSLFSAKIADFGLARLKAEQVEISVAPERDG-DGSMVEEVESVVTT 278
>At4g25390.1 68417.m03652 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 651
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 233 GDVRQVNVLSDRRFAKVGAQDGLAGLLVRQRDVDELVQTAGTQDGRVDDVRSVCGT 66
GD++ NVL D F+ A GLA L Q ++ + G V++V SV T
Sbjct: 224 GDIKPSNVLLDSLFSAKIADFGLARLKAEQVEISVAPERDG-DGSMVEEVESVVTT 278
>At3g60730.1 68416.m06794 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 519
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 38 GRQEERLHHRCHKQTGHHRPGHPASRPS-GPAHLHPAAGREVPRG 169
G ++RLH + G RP H +RP+ GP H R G
Sbjct: 147 GHMKKRLHGPARQGHGPTRPKHRPTRPNHGPGRSHHGPSRPNQNG 191
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 631 QFSCTGRRHPPPPGTWAGRPLKYPCPL*LPRL 536
Q C+ P PPGT A PL P P +P L
Sbjct: 332 QIKCSWGNKPTPPGT-ASNPLPPPAPAPVPGL 362
>At5g38250.1 68418.m04611 serine/threonine protein kinase, putative
similar to receptor serine/threonine kinase PR55K
gi|1235680|gb|AAC49208; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 579
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 230 DVRQVNVLSDRRFAKVGAQDGLAGLLVRQRDVDELVQTAGT 108
D++ NVL D A GLA L +Q + L+ T GT
Sbjct: 390 DIKPQNVLLDENLRPKVADFGLAKLCEKQESILSLLDTRGT 430
>At5g38240.1 68418.m04610 serine/threonine protein kinase, putative
similar to receptor serine/threonine kinase PR55K
gi|1235680|gb|AAC49208; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 588
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 230 DVRQVNVLSDRRFAKVGAQDGLAGLLVRQRDVDELVQTAGT 108
D++ NVL D A GLA L +Q + L+ T GT
Sbjct: 398 DIKPQNVLLDENLKPKVADFGLAKLCEKQESILSLLDTRGT 438
>At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase I
/ isopentenyl diphosphate:dimethylallyl diphosphate
isomerase I (IPP1) identical to SP|Q38929
Length = 233
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 466 DVVVGHGAARELHRLLEVSAANLRNGVFLVHVHNGSGGLLL 344
D VVGH H + ++ A NL + F V + N LLL
Sbjct: 29 DRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLL 69
>At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase II
/ isopentenyl diphosphate:dimethylallyl diphosphate
isomerase II (IPP2) identical to isopentenyl
diphosphate:dimethylallyl diphosphate isomerase (IPP2)
GB:U49259 [Arabidopsis thaliana]
Length = 284
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 466 DVVVGHGAARELHRLLEVSAANLRNGVFLVHVHNGSGGLLL 344
D VVGH + H + + A NL + F V + N LLL
Sbjct: 80 DRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLL 120
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 884
Score = 27.9 bits (59), Expect = 7.3
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +2
Query: 314 EAEIHRERSRXXXXXXXVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQT 493
E E ERSR D P S + + RRSVS + +R ++
Sbjct: 795 EKEKEEERSRHRRAENSSKDKRRRSPTSNESSDDSKRKSRSRRRSVSPSPVR-----SRR 849
Query: 494 LQQSRASEPTSDSQQTRELQGARVLQRATSP-RSRRR 601
+ S +S+ +SD + + ++ R+ SP +SRRR
Sbjct: 850 KRSSPSSDESSDDSKRK--SSSKRKNRSPSPGKSRRR 884
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 6 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLI 134
++ +L +DG+ + + II TN + +DPA++R GR+D I
Sbjct: 332 LSGLLNFIDGIWSACGQERIIIFTTNHFEKLDPALIRRGRMDMHI 376
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 167 LAGLLVRQRDVD-ELVQTAGTQDGRVDDVRSVC-GTDDEDVLLGAH 36
LAG ++ +D E+V G DG +D SVC DDE+V+ H
Sbjct: 125 LAGSRLKAMALDCEMV--GGGADGTIDQCASVCLVDDDENVIFSTH 168
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 167 LAGLLVRQRDVD-ELVQTAGTQDGRVDDVRSVC-GTDDEDVLLGAH 36
LAG ++ +D E+V G DG +D SVC DDE+V+ H
Sbjct: 125 LAGSRLKAMALDCEMV--GGGADGTIDQCASVCLVDDDENVIFSTH 168
>At1g75910.1 68414.m08817 family II extracellular lipase 4 (EXL4)
EXL4 (PMID:11431566); similar to anter-specific
proline-rich protein (APG) SP:P40602 [Arabidopsis
thaliana (Mouse-ear cress)]
Length = 343
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 210 DVDLSYIAKVTQGFSALT*RRYASEPASW 296
D+ +SY T F LT RY ++ A W
Sbjct: 168 DIGISYFGTPTAAFRGLTPNRYTTKLAGW 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,263,059
Number of Sequences: 28952
Number of extensions: 338525
Number of successful extensions: 1409
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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