Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10675
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      27   0.20 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   4.3  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    22   4.3  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.7  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.7  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 172 MHCSRFSLENSQASMYGGRYASSAFVLNT 86
           +HCS  S E+SQA+ YGG ++  + VL +
Sbjct: 93  IHCSVKS-ESSQAAKYGGCFSGESTVLTS 120


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 144 FSNENLEQCIKEQIEKSLPEFTKGIPELDV 233
           F NENL + +K+ +      F  G+  L V
Sbjct: 455 FKNENLSEMVKQFLFTQKFTFVAGLATLSV 484


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 257 PMHWVSRRNVQ 225
           P+H VSR+NVQ
Sbjct: 47  PLHGVSRKNVQ 57


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 447 KMRSFPSASYSAVKLMLLMKANLKFPWSPSNLSLNSFR 334
           + + F S+SYS+ K + ++   LK+    +N+     R
Sbjct: 252 RKKHFSSSSYSSRKRLAMLDLLLKYKSEGANIDDEGIR 289


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 447 KMRSFPSASYSAVKLMLLMKANLKFPWSPSNLSLNSFR 334
           + + F S+SYS+ K + ++   LK+    +N+     R
Sbjct: 252 RKKHFSSSSYSSRKRLAMLDLLLKYKSEGANIDDEGIR 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,293
Number of Sequences: 336
Number of extensions: 3385
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)