Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10675
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0299 - 2322204-2322734,2324089-2326164 29 2.8
11_06_0102 + 20112731-20112928,20113314-20113514,20113606-201136... 29 3.6
07_01_0714 - 5451246-5451408,5453401-5453534,5453608-5453796,545... 29 4.8
05_06_0260 + 26736631-26736771,26736850-26736981,26737066-267372... 29 4.8
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 28 6.4
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 28 6.4
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 28 8.4
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983... 28 8.4
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -2
Query: 447 KMRSFPSASYSAVKLMLLM----KANLKFPWSPSNLSLNSFR*LPFKPCINALVNVSFNP 280
K RSF ++ S++K + A++K P P +LS LP P +A ++ + NP
Sbjct: 404 KCRSFSDSTTSSLKASSKVGKGFSASMKGPEVPPDLSFTGAA-LPSNPSFDAKLSSNLNP 462
Query: 279 LPS 271
LP+
Sbjct: 463 LPA 465
>11_06_0102 +
20112731-20112928,20113314-20113514,20113606-20113695,
20114269-20114457,20115375-20115387,20115824-20115990,
20117334-20117522,20118940-20119053,20120912-20121010,
20122368-20122490,20122579-20122701,20123179-20123277,
20124786-20124842,20125136-20125182,20125296-20125439,
20125540-20125717,20126318-20126398,20126480-20126563,
20126624-20126629
Length = 733
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 559 GTPSYKYKIEKTTFDLKNLFNGNKELADTTL--QFANENWQQLMDDLAPPAI 708
GTP + +E+ D + E AD + QFA EN Q D PPA+
Sbjct: 33 GTPEDRANVERVRRDFTDHRLRRPESADLLMRMQFARENNHQRRGDRIPPAV 84
>07_01_0714 -
5451246-5451408,5453401-5453534,5453608-5453796,
5454313-5454825,5455815-5456856,5457283-5457380,
5458224-5458451
Length = 788
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 704 AGGARSSMSCCQFSLANCRVVSANSL 627
AGG R++ C Q SL +C ++ A L
Sbjct: 355 AGGLRAAAECVQISLGHCSLLEARGL 380
>05_06_0260 +
26736631-26736771,26736850-26736981,26737066-26737248,
26737344-26737370,26737482-26737689,26737863-26737944,
26738097-26738205,26738324-26738443,26738567-26738884
Length = 439
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 247 GSVEGTSSSGIPFVNSGRLFSICSLMHCSRFSLENSQASMYGGRYASS 104
G + T +G F+ CS+ SLEN +M GG+ AS+
Sbjct: 342 GEISYTDITGTSASERAVTFACSEAAPCSKLSLENVNITMAGGQNASA 389
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 75 FAAHVFNTNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLP 200
FA H++N DAY P + C +N ++ + + ++I K +P
Sbjct: 259 FAQHLYNDKRTDAYFPIKVWVCVSTNFDVLR-LTQEILKCIP 299
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +1
Query: 565 PSYKYKIEKTTF----DLKNLFNGNKELADTTLQ 654
P YK+K+E+T F + + FNG +++ +LQ
Sbjct: 187 PEYKFKVERTNFFPQPKVNSAFNGKRKMLRKSLQ 220
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 96 TNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLPEFTKGIPEL 227
++ADDA P Y+E + +C+KE I++ P + + EL
Sbjct: 641 SSADDALRPRYMECLDRMANIAIRCLKEDIDER-PTMAEALEEL 683
>06_03_0956 +
26296744-26297382,26297595-26297669,26298147-26298341,
26298426-26298559,26298713-26298779,26298985-26299043,
26299204-26299321,26299613-26299726,26299855-26299986,
26300076-26300492,26300904-26300954,26301303-26301373,
26302067-26302151,26302258-26302410,26302522-26302596,
26302755-26302844,26303953-26304000,26304081-26304195,
26305356-26305459,26305582-26305692
Length = 950
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 195 LPEFTKGIPELDVPSTDPVHWMTL 266
LP + +P L P+TD HW+ L
Sbjct: 16 LPSVSVALPPLPPPATDDFHWLDL 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,842
Number of Sequences: 37544
Number of extensions: 361819
Number of successful extensions: 881
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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