Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10675
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)                    29   4.9  
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_33996| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-09)                 28   6.5  
SB_31996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 120  PPYIEACEFSNENLEQCIKEQIEKSLPEFTKGIPE 224
            PP ++ CE++ EN+E+   + ++ +      GIP+
Sbjct: 1015 PPALDPCEYNTENMEEVCFDHLKSTYQSDYTGIPQ 1049


>SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 73  YSRLTCSTQTPTMHIYLHTLKPANSPMKTSNSASKN 180
           +S L C+TQTPT  + L   +   S M T+NS++++
Sbjct: 759 FSGLDCATQTPTSVLPLINERGLPSGMSTTNSSTQS 794


>SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)
          Length = 1032

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = +3

Query: 15  DFPI--QESAVSRTMMLIALFL--FAAHVFNTNAD-DAYLPPYIEACEFSNENLEQCI 173
           DFP   ++   ++T++L  L    F     NTN D +AYL   +E  E S  +LEQC+
Sbjct: 535 DFPYSPKDKTYNKTVLLADLKRRGFRTSGSNTNIDYEAYLDRRLEDAESSITDLEQCL 592


>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 117 LPPYIEACEFSNENLEQCIK-EQIEKSLPEFT---KGIPELDVPSTDPVH 254
           LP Y EAC  S +  E C++   + + LP+     +G+P+L    + P +
Sbjct: 216 LPQYFEACHSSPQYFEACLQLPPVFRGLPQLPPVFRGLPQLPPSISRPAN 265


>SB_33996| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-09)
          Length = 537

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 329 CLLSHALMLW*MSVSTRCRRC*CHPMHWVSRRNVQFRNTL 210
           CLL   LM + +S+   C  C C  +HW+  R++QF  TL
Sbjct: 375 CLLPSCLMNYVISL---CESCDCSTVHWL--RDLQFLFTL 409


>SB_31996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 326 LLSHALMLW*MSVSTRCRRC*CHPMHWVSRRNV 228
           L+S +  ++ + V+ RCRR   H + W+ R NV
Sbjct: 4   LVSDSGRIFTIQVNPRCRRRSSHEIQWIRRENV 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,057,279
Number of Sequences: 59808
Number of extensions: 437921
Number of successful extensions: 988
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)