Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10675
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    33   0.27 
Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical pr...    31   0.61 
U56965-6|AAB52669.1|  205|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 544 DHLKLGTPSYKYKIEKTTFDLKNLFNGNKELADTTLQFAN--ENWQQLMDDL 693
           D++K+GT   KYK +K T D  N +   K   D TL++      W  + +D+
Sbjct: 202 DYVKIGTHQTKYKDDKMTSDKCNEYAQEKSTDDKTLKYLTLCGEWCMVSEDM 253


>Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 233 SFD*PSALDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGN 376
           SF    A+++++++G   +L F + LM  L   +LK  K+ F GDH N
Sbjct: 334 SFKTKMAIENLDLEGKS-ELEFIE-LMRYLDEKNLKRLKISFSGDHDN 379


>Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 233 SFD*PSALDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGN 376
           SF    A+++++++G   +L F + LM  L   +LK  K+ F GDH N
Sbjct: 334 SFKTKMAIENLDLEGKS-ELEFIE-LMRYLDEKNLKRLKISFSGDHDN 379


>U56965-6|AAB52669.1|  205|Caenorhabditis elegans Hypothetical
           protein C15H9.10 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 575 LYEGVPSFK*SFPLLSLT*FNLPLF 501
           L + VP+F  SFP+L+ T F+ PLF
Sbjct: 163 LVKYVPAFSNSFPILTSTAFDSPLF 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,869,741
Number of Sequences: 27780
Number of extensions: 332347
Number of successful extensions: 949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)