Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10675
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    42   4e-06
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.8  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +1

Query: 529 DNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNKELADTTLQFANENWQQLMDDL 693
           + NG+ +L++   + K+   K     +NLF+GNKEL +   +F NEN + L  +L
Sbjct: 167 EKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKEL 221



 Score = 29.1 bits (62), Expect = 0.043
 Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
 Frame = +2

Query: 245 PSALDDINI-DGNG---LKLTFTKALMHGL-KGSHLKEFKLKFDGDHGNFKLAFISNMSL 409
           P A+D + I +  G   L+  +    ++GL K   +K + + +D    + + ++   +  
Sbjct: 69  PLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSE-SYNPQVDF 127

Query: 410 TAEYEADGKLLILQIKGKGDALI 478
            A+Y+ +GK+L+L ++G G + I
Sbjct: 128 VADYKIEGKVLLLPVRGAGKSNI 150


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 251 HWVSRRNVQFRNTLRKLRQTL 189
           HW+ R NVQ    L K   TL
Sbjct: 798 HWILRSNVQQCEQLEKAPNTL 818


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 286 QPVAVDVNVIQCTGSVEGTSSSGIPFVNSGRLFSICSLMHCSRFS 152
           QPV++    IQ    ++   SSGIP  +S    +  S  H  RFS
Sbjct: 8   QPVSLQTQRIQGLYLLDNNDSSGIP--HSAESSASNSPDHYERFS 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,291
Number of Sequences: 438
Number of extensions: 3799
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)