Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10674
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    39   3e-04
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   4.8  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   4.8  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   4.8  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   6.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   8.5  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +1

Query: 262 KMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 360
           +M    E+DR +    PKHL +GKRG GKT RR
Sbjct: 610 RMARASESDRHVIAAKPKHLLSGKRGNGKTQRR 642


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 278 ERRTGSSAPRCRSICSLENVGSARRTGDSASADSVL 385
           ERR      R  S+ S+ENV S+    ++ S+ ++L
Sbjct: 90  ERRISEEVVRENSVSSIENVSSSAVARETQSSANIL 125


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 180 PPTSRWPTPSCA*K*RGWP 236
           P    W  P C  K RGWP
Sbjct: 725 PKDHLWLNPDCGLKTRGWP 743


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 101 SPVSDMSTPSFSMSFLSLEVDLCLVLAREVRG 6
           S VS+M  PSFS    +L +  CLV   +  G
Sbjct: 189 SEVSNMDNPSFSKGLHTLHLLECLVDINQASG 220


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 380 HCPLMHYLRSVLPTPRFPANRCFGILVPMNRSASPLRPIFLV 255
           H   +HYL S        +N    +L+  N   SP+R  F++
Sbjct: 62  HLKEIHYLISASAKLLLASNYLLELLISHNIQFSPIRSFFII 103


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 7   PRTSRAKT---KQRSTSKLRKDMEKLGVDMSETGDA 105
           P+ S+ KT   +Q + S   +  EKL  D +ETG++
Sbjct: 558 PKKSKKKTSKAQQEANSTTAEGKEKLSGDSTETGNS 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,773
Number of Sequences: 5004
Number of extensions: 23640
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)