Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10674
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0668 - 4882174-4884204 48 3e-06
07_01_0075 - 558829-560859 46 2e-05
12_02_1193 + 26891619-26892456,26892545-26893884 31 0.51
04_03_0881 + 20528257-20528760,20528837-20529283 29 1.2
11_04_0301 + 16142236-16142945,16143748-16144247,16144557-161446... 29 1.5
02_03_0321 - 17683766-17683834,17685085-17685150,17685568-176856... 29 2.0
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 28 2.7
11_01_0641 + 5146013-5146555 27 4.7
10_07_0019 + 11931519-11932310 27 4.7
10_02_0175 - 6207485-6207898 27 4.7
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196... 27 4.7
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 27 4.7
09_03_0215 + 13524418-13524465,13524856-13525171,13525291-135253... 27 6.2
05_04_0431 + 21175357-21175655,21175716-21175851,21175859-21176155 27 6.2
05_03_0624 - 16319364-16320581 27 6.2
05_03_0599 + 16026042-16027259 27 6.2
09_06_0113 + 20938357-20938730,20938820-20939057,20939140-209392... 27 8.2
01_06_1219 - 35490475-35491635 27 8.2
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 27 8.2
>06_01_0668 - 4882174-4884204
Length = 676
Score = 48.0 bits (109), Expect = 3e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +1
Query: 211 ARESKEDGPRGHRQETKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 360
A + +D R +E ++ GEADR I T PKHLF+GKR +GKT RR
Sbjct: 631 AIKKAKDSVRNRNKEARR----GEADRVIPTLKPKHLFSGKRSIGKTSRR 676
>07_01_0075 - 558829-560859
Length = 676
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1
Query: 211 ARESKEDGPRGHRQETKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 360
A + +D R +E ++ GEADR I T PKHLF+GK +GKT RR
Sbjct: 631 AIKKAKDSVRNRNKEARR----GEADRVIPTLKPKHLFSGKSSIGKTSRR 676
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 30.7 bits (66), Expect = 0.51
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 173 GEPSNQPVADPIMRVKVKRMAHAAIAKRPRRWASR 277
G P +QPVA P+M K KR A W R
Sbjct: 592 GSPPHQPVASPLMEAKGKRAVAETSASEYSLWVPR 626
>04_03_0881 + 20528257-20528760,20528837-20529283
Length = 316
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Frame = +3
Query: 180 PPTSRWPTPSCA*K*RG---WPTRPSPRDQEDGPQGRGGPVHR 299
P S WP PSC WPT P +D G V+R
Sbjct: 45 PAPSSWPWPSCRHPRTSSFRWPTAPQQGQADDDAAAAAGSVYR 87
>11_04_0301 +
16142236-16142945,16143748-16144247,16144557-16144649,
16144879-16145005,16145265-16145468,16145587-16145692
Length = 579
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 198 PTPSCA*K*RGWPTRPSPRDQEDGPQGRGGPVHRHQDAEASVRWKTWGRQDG 353
P P+C+ GW R SP D + GG + S R ++G +DG
Sbjct: 202 PPPTCSGHVEGWYKRFSPHDDDGSDGANGGADGAAMNMSTSER--SYGSKDG 251
>02_03_0321 -
17683766-17683834,17685085-17685150,17685568-17685633,
17685827-17685897,17688035-17688053,17688405-17688687,
17688775-17688945,17689060-17689431,17689629-17689669,
17690112-17690365,17691185-17691263,17691390-17691950
Length = 683
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +3
Query: 207 SCA*K*RGWPTRPSPRDQEDGPQGRGGPVHRH---QDAEASVRWKTWGRQDGP 356
+C K P P P+ + GP +G P R+ + AE WK W D P
Sbjct: 143 NCGKKGHYSPNCPYPKTGKSGPHTQGAPQRRNVADEFAEHLPTWKWWQYVDYP 195
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 251 KRPRRWASRERRTGSSAPRCRSICSLENVGSARRTGDSASADSVLYQYIY 400
+RPR+ R R + P C ++C V + R + ++ + Y YIY
Sbjct: 37 RRPRK-LRRLRLQQAGEPLCEALCRCRLVETGRNSVTTSPPSTFCYDYIY 85
>11_01_0641 + 5146013-5146555
Length = 180
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +3
Query: 231 WPTRPSPRDQEDGPQGRGGPVHRHQDAEASVRWKTW---GRQDGPE 359
W SP QED + R P+ H AE + + W GRQ P+
Sbjct: 46 WEVADSPLFQEDAGREREEPILSHCAAEEPLTCRIWRGVGRQWHPD 91
>10_07_0019 + 11931519-11932310
Length = 263
Score = 27.5 bits (58), Expect = 4.7
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +1
Query: 184 QPAGGRPHHARESKEDGPRGHRQETKKMGLKGE----ADRFIGTKMPKHLFAGKRGVGKT 351
+ AGGRP RE ++ G G GLK E A FIG + G+ +G T
Sbjct: 164 EAAGGRPAPEREKEKAGRGGAATRELGKGLKRENTQRAFHFIGEGRELGMREGRTAMGNT 223
>10_02_0175 - 6207485-6207898
Length = 137
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 255 DQEDGPQGRGGPVHRHQDAEASVRWKTWGRQDGPEIVHQR 374
D +G G GG V +A ++ RW+ W R+DG E + R
Sbjct: 90 DAVEGGGGVGGSVEA--EAASAARWR-WRRRDGGERIGMR 126
>09_02_0602 -
11118788-11119178,11119262-11119451,11119590-11119658,
11119890-11120016,11120134-11120399,11120760-11120872,
11121693-11121764,11121860-11121998,11124277-11124360,
11125278-11125771,11127604-11128187
Length = 842
Score = 27.5 bits (58), Expect = 4.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 267 GPQGRGGPVHRHQDAEASVRWKTWGRQDGP 356
GP R P+ R+ + W WG +D P
Sbjct: 185 GPSSRDNPIIRYPNDTYDRFWYPWGSEDDP 214
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 299 PMNRSASPLRPIFLVSWRWPRGPSSLLSRA*WGRPPAGWRVL 174
P R ++PL P + P P+ L+ R W RPP GW L
Sbjct: 125 PAPRCSTPLSP-----YSPPFRPARLIVR--WARPPPGWHKL 159
>09_03_0215 +
13524418-13524465,13524856-13525171,13525291-13525352,
13526352-13527063,13527847-13527863
Length = 384
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 190 AGGRPHHARESKEDGPRGHRQETK 261
AGG A E+ EDG RGH+++T+
Sbjct: 304 AGGE--EAEEAVEDGERGHKKKTR 325
>05_04_0431 + 21175357-21175655,21175716-21175851,21175859-21176155
Length = 243
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 254 RPRRWAS-RERRTGSSAPRCRSICSLENVGSARRTG 358
RPR W S R RR G+ R +I + N G+ RR G
Sbjct: 84 RPRLWFSARRRRKGTMTIRVTAISAASN-GAMRRDG 118
>05_03_0624 - 16319364-16320581
Length = 405
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 305 LVPMNRSASPLRPIFLVSWRWPRGPSSLLSRA*WGRPPAGW 183
L+P R ++PL P P PS ++ R W RPP GW
Sbjct: 208 LLPAPRCSTPLSPSSP-----PFRPSRVIVR--WARPPPGW 241
>05_03_0599 + 16026042-16027259
Length = 405
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 305 LVPMNRSASPLRPIFLVSWRWPRGPSSLLSRA*WGRPPAGW 183
L+P R ++PL P P PS ++ R W RPP GW
Sbjct: 208 LLPAPRCSTPLSPSSP-----PFRPSRVIVR--WARPPPGW 241
>09_06_0113 +
20938357-20938730,20938820-20939057,20939140-20939264,
20939682-20939715,20939804-20939850,20939948-20940079,
20940420-20940484,20940613-20940685,20940790-20940946
Length = 414
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 7 PRTSRAKTKQRSTSKLRKDMEKLGVDMSE 93
P+TSR + +RSTS K M K G+ E
Sbjct: 353 PQTSRFSSNKRSTSCSTKSMPKPGLQKQE 381
>01_06_1219 - 35490475-35491635
Length = 386
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -3
Query: 371 LMHYLRSVLPTPRFPANRCFGILVPMNRSASPLRPIFLVSW 249
L L S LPTPR V R ASPLR SW
Sbjct: 24 LPQLLDSPLPTPRRSCASADAASVRCRREASPLRTQVPFSW 64
>01_04_0010 -
15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 217 ESKEDGPRGHRQETKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR*CISGQ 378
+SKE PRG + KM + E + ++ K + AG G + CI G+
Sbjct: 179 QSKEKKPRGRGRHASKMTEEEEDEEYL--KEEEDALAGSGGTRLLSQPSCIKGK 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,391,166
Number of Sequences: 37544
Number of extensions: 209549
Number of successful extensions: 761
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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