Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10674
(424 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044) 28 2.8
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 27 8.5
SB_28330| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 27 8.5
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9) 27 8.5
>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 53.6 bits (123), Expect = 6e-08
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +1
Query: 247 RQETKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 360
+++ +MG GEADR I TKMPKHLF+GKR GKT RR
Sbjct: 518 QRKMNRMGKAGEADRMIRTKMPKHLFSGKRKGGKTSRR 555
>SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 261 EDGPQGRGGPVHRHQDAEASVRWKTWGRQDGPEIVHQR 374
ED GG HR +D EAS+ K +DG ++H R
Sbjct: 417 EDDDDVNGGDYHRVEDDEASITIKQTNAEDG-HVLHLR 453
>SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)
Length = 261
Score = 28.3 bits (60), Expect = 2.8
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +2
Query: 173 GEPSNQPVADPIMRVKVKRMAHAAIAKRPRRWASRERRTGSSAPRCRSICSLENVGSARR 352
G+ S PV P R ++ +AHA I+ R R + S+APR + + + + R
Sbjct: 135 GKESYAPVPTPAKRRRLTHIAHARISLRERNPDALRLSILSTAPRRDGVQMIIVMKAVRA 194
Query: 353 TGDSASADSVLYQYI 397
S + +YI
Sbjct: 195 GNISRKGSNCRIRYI 209
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 225 RGWPTRPSPRDQEDGPQGRGG 287
RG P R +PR + P+GRGG
Sbjct: 509 RGGPPRGAPRGRSGPPRGRGG 529
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 199 RPH-HARESKEDGPRGHRQETKKMGLKGEADR 291
RP H R+ + G RGH + KK +K E+ +
Sbjct: 748 RPRRHGRQGRRSGRRGHDRSRKKFEVKRESGK 779
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -3
Query: 377 CPLMHYLRSVLPTPRFPANRCFGILVPMNRSASPLRPIFLVSWRWPRGPSSLLSRA*WG 201
C +HY R V+ R P L P+ + + + + + P+G +S+ WG
Sbjct: 980 CIAIHYCRHVMAAKRMPDEELDAFLRPIYYARGGFQGVTALHAKLPKGLASIDRVRKWG 1038
>SB_28330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 181 LQPAGGRPH-HA----RESKEDGPRGHRQETKKMGLKGEADRFIGTKMPKHL 321
LQ A G P H R+ + G R H ++ + L + DR I +K KH+
Sbjct: 9 LQSASGIPRSHGSWCQRQRRHKGARAHGTRSELVTLMSQEDRIICSKARKHV 60
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 26.6 bits (56), Expect = 8.5
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +2
Query: 176 EPSNQPVADPIMRVKVKRMAHAAIAKRPRRWASRERRTGSSAPRCRSICSLENVGSARRT 355
+ S+ P P R K +R ++ PRR + +SAPR R +V RR+
Sbjct: 251 QDSSSPSVSPPRRSKGRREENSV--SPPRRSKGKREDNSASAPRSRGKREENSVSPPRRS 308
Query: 356 GDSASADSV 382
+SV
Sbjct: 309 KGRREENSV 317
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 260 RRWASRERRTGSSAPRCRSICSLENVGSARRTGDSASADSVLYQYIY 400
RRW R R T ++ P RS+ ++ A+ + + + LY+Y++
Sbjct: 92 RRWRPRHRLTIANYPYTRSVSCVDLPIYAKWSRRRSITSNSLYEYLF 138
>SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9)
Length = 398
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 205 HHARESKEDGPRGHRQETKKMGLKGEADRFIGTKMPKHLFAGKR 336
H A+E++ED R H E +K L E RF K K L +R
Sbjct: 96 HQAKEAQEDKER-HVTEERKELLLQEIRRFPSKKKQKELLEQER 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,168,059
Number of Sequences: 59808
Number of extensions: 209393
Number of successful extensions: 615
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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