Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10674
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   2.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.5  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 260 RRWASRERRTGSSAPRCRSICSLEN 334
           RRW  RE R   +A     + +LEN
Sbjct: 1   RRWDRREARRARTAFTYEQLVALEN 25


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = -3

Query: 374 PLMHYLRSVLPTPRFPANRCFGILVPMNRSASP 276
           P   Y+    P PRF     + +  P+N    P
Sbjct: 151 PRFRYIGPPTPFPRFIPPNAYRLRPPLNPRFGP 183


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = -3

Query: 374 PLMHYLRSVLPTPRFPANRCFGILVPMNRSASP 276
           P   Y+    P PRF     + +  P+N    P
Sbjct: 151 PRFRYIGPPTPFPRFIPPNAYRLRPPLNPRFGP 183


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 260  LVSWRWPRGPSSLLSR 213
            LVSWR P  P+ ++++
Sbjct: 1197 LVSWRPPSQPNGVITQ 1212


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = -3

Query: 374 PLMHYLRSVLPTPRFPANRCFGILVPMNRSASP 276
           P   Y+    P PRF     + +  P+N    P
Sbjct: 379 PRFRYIGPPTPFPRFIPPNAYRLRPPLNPRFGP 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,249
Number of Sequences: 438
Number of extensions: 1917
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)