Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10674
         (424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50920.1 68414.m05725 GTP-binding protein-related similar to ...    52   2e-07
At1g10300.1 68414.m01160 GTP-binding protein-related contains si...    48   3e-06
At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger) fa...    29   1.7  
At5g46220.1 68418.m05688 expressed protein contains Pfam profile...    28   3.0  
At4g05300.1 68417.m00803 hypothetical protein                          27   5.2  
At1g76010.1 68414.m08825 expressed protein                             27   5.2  
At4g08860.1 68417.m01456 hypothetical protein                          27   6.9  
At2g07776.2 68415.m00891 hypothetical protein                          27   6.9  
At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family p...    26   9.1  

>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
           GTP-binding protein SP:Q99ME9 from [Mus musculus]
          Length = 671

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +1

Query: 238 RGHRQETKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 360
           + H++  K    +GEADR I T  PKHLF+GKRG GKTDRR
Sbjct: 632 KSHKKRDKN-ARRGEADRVIPTLRPKHLFSGKRGKGKTDRR 671


>At1g10300.1 68414.m01160 GTP-binding protein-related contains
           similarity to nucleolar GTP-binding protein 1 SP: Q9BZE4
           from [Homo sapiens];
          Length = 687

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 23/43 (53%), Positives = 28/43 (65%)
 Frame = +1

Query: 232 GPRGHRQETKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 360
           G + HR+  K    +GEADR I +  PKHLF+GKRG GK  RR
Sbjct: 646 GHKSHRKRDKA-ARRGEADRVIPSLKPKHLFSGKRGNGKNQRR 687


>At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger)
           family protein 
          Length = 630

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 275 RERRTGSSAPRCRSICSLENVGSARRTGDSASADSVLYQYIYL 403
           ++RR+G   P C  ICSL +V     +  +A  D    + ++L
Sbjct: 154 QQRRSGGKCPLCNKICSLRDVRKIYASRVAAVDDEAHKRILFL 196


>At5g46220.1 68418.m05688 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616)
          Length = 465

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 291 VHRHQDAEASVRWKTWGRQDGPEI 362
           V+  ++A A+ RWK WG  DG  I
Sbjct: 299 VNTMEEAMATARWKKWGDVDGLRI 322


>At4g05300.1 68417.m00803 hypothetical protein
          Length = 387

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 278 ERRTGSSAPRCRSICSLENVGSARRTGDS 364
           +R  GS+ P  R I S   +GSARR G +
Sbjct: 239 DRWIGSARPIVRRIGSARRIGSARRIGSA 267


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 228 GWPTRPSPRDQEDGPQGRGG 287
           G+   P  R   DGPQGRGG
Sbjct: 239 GYDAPPQGRGGYDGPQGRGG 258


>At4g08860.1 68417.m01456 hypothetical protein
          Length = 214

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 221 VKRMAHA-AIAKRPRRWASRERRTGSSAPRCRSICSLENVGSARRTGDSASADSVL 385
           V+ +A A A+   PRR   RE R  S +      C L   G++R     A+A  VL
Sbjct: 20  VREVAKAYAVVGVPRRLVGREERLISWSRLSEGWCKLNTDGASRGNPGLAAAGGVL 75


>At2g07776.2 68415.m00891 hypothetical protein
          Length = 109

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -3

Query: 416 FFFSINIYIGKXHCPLM--HYLRSVLPTPRFPANRCFGIL-VPMNRSASPLRPIFLVSWR 246
           FFF + +   +    L+  H +R +LPTPR   NR  G L  P +R  +P   + +    
Sbjct: 4   FFFLLLLISHREQLLLVQGHQMRDLLPTPR---NRSNGRLPSPFSRVINPSTHLSIHKKA 60

Query: 245 WPRGPSSL 222
            PRG   L
Sbjct: 61  LPRGERKL 68


>At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family
           protein weak similarity to SP|Q00765 Polyposis locus
           protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
           profile PF03134: TB2/DP1, HVA22 family
          Length = 315

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 180 PPTSRWPTPSCA*K*RGWPTRPSPRDQEDGPQ 275
           PP    P+P+ A K    P +PSP + E+  Q
Sbjct: 240 PPPPPPPSPTTAAKRNADPAQPSPTEAEEASQ 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,707,147
Number of Sequences: 28952
Number of extensions: 144868
Number of successful extensions: 409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)