Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10673
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 33 0.030
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 30 0.38
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 30 0.38
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 29 0.66
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 29 0.66
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 29 0.87
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.6
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 27 2.6
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 27 3.5
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 27 3.5
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 4.6
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 6.1
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 26 6.1
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo... 25 8.1
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 33.5 bits (73), Expect = 0.030
Identities = 20/81 (24%), Positives = 37/81 (45%)
Frame = -2
Query: 267 ASHNRCHVVDTRRFYFMKSIVKICGYVYIVALTWLVGVTAXXXXXXXXXXXXSTLKPRFN 88
AS ++ + + +F+K+I+ + Y+Y++ W+V T P F
Sbjct: 16 ASSDKPNNCSRKNMFFLKNIIVLSNYLYLLYKAWIVCTTISLCCDFPLFNFLFIAIPYFT 75
Query: 87 GIGWHCMSYLVFMNY*KLCFI 25
I ++ S L F+ + LCFI
Sbjct: 76 EILYNDSSLLWFL-FVSLCFI 95
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 29.9 bits (64), Expect = 0.38
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 644 CPPCMFQKRLSNISSELGFNFAVSCVS 564
C P +FQKR SN+S + FN ++ V+
Sbjct: 16 CQPLLFQKRSSNVSDFISFNASLPNVT 42
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 29.9 bits (64), Expect = 0.38
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 644 CPPCMFQKRLSNISSELGFNFAVSCVS 564
C P +FQKR SNIS + FN ++ V+
Sbjct: 16 CQPFLFQKRSSNISDFISFNASLPNVT 42
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 294 SRSFQLRLPASHNRCHVVDTRRFYFMKSIVKICGY 190
++SF +R SH C R F+ KS CGY
Sbjct: 5 TQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGY 39
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 294 SRSFQLRLPASHNRCHVVDTRRFYFMKSIVKICGY 190
++SF +R SH C R F+ KS CGY
Sbjct: 5 TQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGY 39
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 28.7 bits (61), Expect = 0.87
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = +1
Query: 382 QQPPTPTPVCFVQHTTIQIYLVVSWSI*YNIFGLMKQVQTKTKLDISILSAEVQRKK--N 555
++PP PVC ++ T Q V W+ Y L Q + ++ + E++R++
Sbjct: 172 KEPPKTYPVCTIRSTPSQPIHCVVWAKSYFFPQLFSNDQESDGIIDNVSANEMERREIAE 231
Query: 556 IGPETHETAKLKPS---SEDILESLF 624
+ ET E +L+ S S++ E +F
Sbjct: 232 LARETTELNELRSSIGQSDNGFEKIF 257
>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 100 AKIQWYWLALYELSSVYELL 41
+ I WY+L L+ L SVY LL
Sbjct: 172 SSISWYFLNLFGLKSVYALL 191
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 348 QSKRFREEVMVPTTTNSNPCLLRPTHNNPD 437
QSK ++ + VP + N P + RP NP+
Sbjct: 200 QSKETKKSLQVPPSRNVPPPVTRPNQYNPE 229
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 481 LMKQVQTKTKLDISILSAEVQRKKNIGPETHETAKLKPSSEDILESLFWN 630
L +++Q TKLD + Q + T T LK + + +LES F N
Sbjct: 434 LAERLQNLTKLDQQAQALSTQISASTSLSTVLTQALKTNDQSLLESCFNN 483
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = -3
Query: 587 NFAVSCVSGPMFFFL*TSADKMEISNFVFVCTC----FIKPKI-LYHMDHETTRYIWI-- 429
NF ++ +SG + L + + N +F C C F + + LY++++ T+Y+ +
Sbjct: 92 NFILTIISGALLALLVEEVFRNYMRNGLFYCVCDSRHFTQRLVTLYYLNY-LTKYLELMD 150
Query: 428 -VVCWTKQTGVGVGGCWHHNL 369
V + K+ + C+HH +
Sbjct: 151 TVFLFLKKKPLAFLHCYHHGI 171
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 255 DCEMQEVAIEKNVNTLVTTARKRSADNSGYPQSKRFREEVMVPTTTNSN 401
D +++E++ ++ ++ RK+ DN+G K E+ ++P N N
Sbjct: 630 DAKVEEISDQRAISQRYYELRKKMIDNTG-EYIKDEEEQAVIPLDENGN 677
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 701 HKISH*HHKEEAQ-FK*L*KCPPCMFQKRLSNISSELGFNFAVSCV 567
H I+ + +EAQ +K + KC C F S + G F +C+
Sbjct: 619 HLINQAYETQEAQVYKGMLKCSVCNFSNWKSKLIPNCGHAFCSNCM 664
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 419 WTKQTGVGVGGC 384
WTK TG G GGC
Sbjct: 322 WTKLTGAGGGGC 333
>SPBC409.09c |mis13|cnl1|kinetochore protein
Mis13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 562 PETHETAKLKPSSEDILESLFWNIHGGH 645
PE +KLKP +L+ L NIH H
Sbjct: 245 PELPNISKLKPKFHTLLDMLAENIHTLH 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,718
Number of Sequences: 5004
Number of extensions: 71042
Number of successful extensions: 219
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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