Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10673
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583     29   2.8  
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588...    29   4.8  
07_01_0933 + 7863508-7864368                                           28   8.4  
03_02_0435 - 8406262-8406419,8406499-8406547,8406577-8407458,840...    28   8.4  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    28   8.4  

>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
          Length = 602

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 383 WHHNLFSKTLALWIAAVISTSFSSCGYKGVHVLF 282
           W   + +  L LW+ AV+  SF   GY GV  LF
Sbjct: 102 WFAGVAALYLPLWLVAVVGASFGLVGY-GVQFLF 134


>01_06_1535 +
           38057802-38057999,38058338-38058437,38058730-38058890,
           38059166-38059363,38059442-38059534,38059732-38059854,
           38060637-38060884,38061004-38061175,38061407-38061493,
           38061523-38061786,38062415-38062577,38062839-38062926,
           38063010-38063079,38063566-38063694,38063773-38063811,
           38065539-38065760,38065935-38065999,38066095-38066288,
           38066539-38066805,38066908-38066995,38067091-38067216,
           38067291-38067400,38067523-38067671
          Length = 1117

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 484 MKQVQTKTKLDISILSAEVQRKKNIGPETHETAK-LKPSSEDILESLFWNIHGGHFYSY- 657
           +  +Q  TKL IS L+AE++R +     + + AK L    ED+ + L  ++   +   + 
Sbjct: 202 LSYLQDDTKLSISKLNAELERMRLRALNSEDEAKLLNEQLEDLKKQLDESVRENNEMEHR 261

Query: 658 -LNCAS 672
            LNC+S
Sbjct: 262 LLNCSS 267


>07_01_0933 + 7863508-7864368
          Length = 286

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -3

Query: 452 ETTRYIWIVVCWTKQTGV----GVGGCWHHNLFSKTL 354
           E TR   +VV W  Q  V     VGG W HN ++ TL
Sbjct: 155 EATRGRGMVVSWAPQQDVLKHRAVGGFWTHNGWNSTL 191


>03_02_0435 -
           8406262-8406419,8406499-8406547,8406577-8407458,
           8408976-8409127,8410346-8410616
          Length = 503

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 515 SNFVFVCTCFIKPKILYH-MDHETTRYIWIV 426
           SNF F+      PK+LYH M    T   W V
Sbjct: 249 SNFAFIIVLLFAPKLLYHFMKKSLTYQRWTV 279


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 243 VDTRRFYFMKSIVKICGYVYIVALTWLVGV 154
           +DT    F+  +  I G +Y +  TW+VG+
Sbjct: 65  LDTMMGVFVPCLQNILGIIYYIRFTWIVGM 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,035,367
Number of Sequences: 37544
Number of extensions: 434064
Number of successful extensions: 1177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)