Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10673
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 29   2.8  
SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)                     29   2.8  
SB_28951| Best HMM Match : DUF81 (HMM E-Value=8.5)                     29   4.9  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     29   4.9  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     29   4.9  
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_12370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_30042| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1841

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 231  VGYQPHGNDCEMQEVAIEKNVNTLVTTARKRSADNSGYPQSKR 359
            +  QPHG D    +   E   N+L    ++R  +N G  Q  R
Sbjct: 1727 ISLQPHGKDAAEPKKECESYYNSLAVVLQRRDWENPGVTQLNR 1769


>SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)
          Length = 1845

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 539  TSADKMEISNFVFVCTCFIKPKILYHMDHETT 444
            T+A K ++  F+F+C  F  PKI +     TT
Sbjct: 1410 TTASKSKLLRFIFICGDFNLPKISWESQENTT 1441


>SB_28951| Best HMM Match : DUF81 (HMM E-Value=8.5)
          Length = 267

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -3

Query: 596 LGFNFAVSCVSGPMFFFL*TSADKMEISNFVFVCTCFIKPKILYHMDHETTRYIWIVVCW 417
           +G  F   CV+  + F     AD + +   VFV  C     +++  D  T   +++V+C 
Sbjct: 92  VGLVFVADCVTVGLVFV----ADCVTVGGLVFVVDCVTVGGLVFVADCVTVGLVFVVICV 147

Query: 416 T 414
           T
Sbjct: 148 T 148


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -3

Query: 440 YIWIVVCWTKQTGVGVGGCWHHNLFSKTLALWIAAVISTSFSSCGYKG-VHVLFNCDF-L 267
           Y+ ++  W  ++ + V   W +  F   L+ W+      + S C YK  ++VL    +  
Sbjct: 57  YLNVLSYWLYKSYLNVLSYWLYKSFLNVLSYWLFKSYLNALSYCPYKSYLNVLLYWPYKS 116

Query: 266 HLTIVAMWL 240
           +L ++  WL
Sbjct: 117 YLNVLLYWL 125


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -3

Query: 440 YIWIVVCWTKQTGVGVGGCWHHNLFSKTLALWIAAVISTSFSSCGYKG-VHVLFNCDF-L 267
           Y+ ++  W  ++ + V   W +  F   L+ W+      + S C YK  ++VL    +  
Sbjct: 41  YLNVLSYWLYKSYLNVLSYWLYKSFLNVLSYWLFKSYLNALSYCPYKSYLNVLLYWPYKS 100

Query: 266 HLTIVAMWL 240
           +L ++  WL
Sbjct: 101 YLNVLLYWL 109


>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 199 LWICVHCRIDLVGWRHRKSEQVEQHQNYI*HPEAKIQWYWLAL 71
           L +C    ID V WR   + + E H  +I      IQW+W A+
Sbjct: 444 LLMCGLGEIDTVDWRKNSNYRGEYHDKHI-----VIQWFWKAV 481


>SB_12370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 709 IHF-TKYHTNITKKKHSLNNYKNVRHVCSRKDFPIYLLNLVLISQSRVSQVQCFSFFELL 533
           +HF TK   ++TK   S +   N +  CSR +    L    L   S +++ +   +FE++
Sbjct: 5   VHFSTKKREHVTKANDSYDATLNRQRKCSRLNTKTTLRKKTLRESSSINEERKGKYFEIM 64

Query: 532 QI 527
            +
Sbjct: 65  SV 66


>SB_30042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 463 IWTMRQRDISGLLCVGRSKQGLELVVVGTIT 371
           ++T     +   LC+G SK+  E VV+G IT
Sbjct: 40  MYTELDESVYTFLCIGSSKEVWEKVVIGVIT 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,763,316
Number of Sequences: 59808
Number of extensions: 530716
Number of successful extensions: 1402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)